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Domain assignment for WP_011668473.1.34389 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  WP_011668473.1.34389
Domain Number 1 Region: 48-173
Classification Level Classification E-value
Superfamily Insert subdomain of RNA polymerase alpha subunit 1.03e-42
Family Insert subdomain of RNA polymerase alpha subunit 0.0000662
Further Details:      
 
Domain Number 2 Region: 4-48,174-228
Classification Level Classification E-value
Superfamily RBP11-like subunits of RNA polymerase 5.49e-34
Family RNA polymerase alpha subunit dimerisation domain 0.00056
Further Details:      
 
Domain Number 3 Region: 249-314
Classification Level Classification E-value
Superfamily C-terminal domain of RNA polymerase alpha subunit 5.23e-24
Family C-terminal domain of RNA polymerase alpha subunit 0.0000442
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) WP_011668473.1.34389
Sequence length 316
Comment DNA-directed RNA polymerase subunit alpha [Lactobacillus brevis]; AA=GCF_002093065.1; RF=na; TAX=1580; STAX=1580; NAME=Lactobacillus brevis; strain=CRL 2013; AL=Contig; RT=Major
Sequence
MIEFEKPNIHKIDESNNYGKFIVEPLERGYGTTLGNSLRRILLSSLPGAAVTSIQIDGVL
HEFSTVEGVVEDVTQIILNVKKIALKLNGSDDQEETMEINVKGPAQITAGDIVAGADVDI
LNPDLYIATVADGATFHMRMTADKGRGYVSADENKTRNTDMPIGVLAVDSIYTPIERVNY
QVENARVGQRADYDKLTLDVWTNGSINPSEAIALAAKILTEHLAMFVDLTDEAKNAEIMV
EKEETHKEKMLEMTIEELDLSVRSYNCLKRAGINTVQELNNKTEADMMKVRNLGRKSLEE
VKAKLADLGLSLRKED
Download sequence
Identical sequences A0A0A7U1N0 A0A0C1PL48 M5AFP7 Q03PY3 U2QZ50
WP_011668473.1.1001 WP_011668473.1.101817 WP_011668473.1.101959 WP_011668473.1.10245 WP_011668473.1.12110 WP_011668473.1.12992 WP_011668473.1.14555 WP_011668473.1.30569 WP_011668473.1.33510 WP_011668473.1.34389 WP_011668473.1.35134 WP_011668473.1.35844 WP_011668473.1.41999 WP_011668473.1.47372 WP_011668473.1.49372 WP_011668473.1.51823 WP_011668473.1.56537 WP_011668473.1.57633 WP_011668473.1.61846 WP_011668473.1.6335 WP_011668473.1.63668 WP_011668473.1.67033 WP_011668473.1.67380 WP_011668473.1.68109 WP_011668473.1.71826 WP_011668473.1.74392 WP_011668473.1.78399 WP_011668473.1.79023 WP_011668473.1.80197 WP_011668473.1.8329 WP_011668473.1.85477 WP_011668473.1.86233 WP_011668473.1.86414 WP_011668473.1.92695 387344.LVIS_1664 gi|472407340|ref|YP_007654445.1| gi|116334243|ref|YP_795770.1|

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