SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for WP_012519843.1.96561 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  WP_012519843.1.96561
Domain Number 1 Region: 18-523
Classification Level Classification E-value
Superfamily PLP-dependent transferases 3.23e-100
Family Pyridoxal-dependent decarboxylase 0.0015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) WP_012519843.1.96561
Sequence length 544
Comment glutamate decarboxylase [Alteromonas mediterranea]; AA=GCF_000439595.1; RF=na; TAX=1300259; STAX=314275; NAME=Alteromonas mediterranea UM4b; strain=UM4b; AL=Complete Genome; RT=Major
Sequence
MGEAQVSLEHLFRVFTKPEHKDSKLAQIEQHLSDNILDFLSQHVVTKKTSLEEIEKDFSD
SKVPESPEFVSTHAESLLDKLVAHSVNTYSPTFIGHMTSALPYFHLPLSKLMVGLNQNLV
KIETSKAFTPLERQVLGMMHNLVYDQPQRFYDNHLHSAAHSLGAFCSGGTIANITALWVA
RNKLLGPQDGFCGVAKAGLAAAYRHLDINNLGVMCSKRGHYSLSKAVDVLGLGRDQLLTI
PAPRQTLDPAKALRIGKRYQEEGNKLLAIVGVGGTTETGHVDPLDELADVANELGCWFHV
DAAWGGATLFSSRYRDRLKGIERADSVTIDAHKQMYVPMGAGMALFKDPQNANAVRHHAQ
YILRAGSKDLGATTLEGSRNGMAMMVYSALHIFGRKGYELLIDRSIDKAKDFSHMIDKAG
DFELTTTPTLSLLTYRVCPEEVQEKLKHADANMRNAINEKVDALVVAVQKQQREAGKSFV
SRTRLEAPDYPSQCITVFRVVLANPLTSHNDLAAILAEQHLIAKETQAWAELMNFVRDSE
KVAS
Download sequence
Identical sequences F2G682 S5AK16 S5C788
gi|522615891|ref|YP_008181581.1| 314275.MADE_03552 gi|410863284|ref|YP_006978518.1| gi|332143074|ref|YP_004428812.1| gi|522571071|ref|YP_008173500.1| gi|522651578|ref|YP_008194041.1| WP_012519843.1.21115 WP_012519843.1.24997 WP_012519843.1.30323 WP_012519843.1.35093 WP_012519843.1.36926 WP_012519843.1.48123 WP_012519843.1.68468 WP_012519843.1.96561 gi|522817238|ref|YP_008185467.1| gi|522591515|ref|YP_008177592.1| gi|522669453|ref|YP_008197915.1| gi|566719980|ref|YP_008920302.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]