SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for WP_013047844.1.58668 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  WP_013047844.1.58668
Domain Number 1 Region: 82-216
Classification Level Classification E-value
Superfamily GntR ligand-binding domain-like 2.38e-24
Family GntR ligand-binding domain-like 0.0071
Further Details:      
 
Domain Number 2 Region: 8-80
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 1.57e-22
Family GntR-like transcriptional regulators 0.01
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) WP_013047844.1.58668
Sequence length 230
Comment GntR family transcriptional regulator [Aminobacterium colombiense]; AA=GCF_000025885.1; RF=representative genome; TAX=572547; STAX=81468; NAME=Aminobacterium colombiense DSM 12261; strain=DSM 12261; AL=Complete Genome; RT=Major
Sequence
MDQNTLTPATNQGLRQIVYEKLKDAIVNGVLKPGSKLSEIELAEQLAVSRTPVREAIRQL
SQTGLITLTPRRGAFVTLPSLKDASDLYELRQALEIIAIENVCENPPIKDLKLFREIFSA
MSGQTSHEEYLTEDRRFHCFLYECSGNKYLHKTLNNIVDLINLCRPYSMQSDPTIMGVFL
KGHLAIIDAVLHGDCKKAIAEMGSHIEDTKRSLLAFLRQHPGDYTSVEEE
Download sequence
Identical sequences D5EDE6
WP_013047844.1.58668 gi|294101444|ref|YP_003553302.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]