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Domain assignment for WP_013060886.1.91540 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  WP_013060886.1.91540
Domain Number 1 Region: 812-1037
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB transmembrane domain 5.89e-46
Family Multidrug efflux transporter AcrB transmembrane domain 0.00073
Further Details:      
 
Domain Number 2 Region: 290-485
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB transmembrane domain 5.89e-38
Family Multidrug efflux transporter AcrB transmembrane domain 0.00026
Further Details:      
 
Domain Number 3 Region: 42-131
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 6.1e-19
Family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 0.0028
Further Details:      
 
Domain Number 4 Region: 181-263
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.000000000000222
Family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.0063
Further Details:      
 
Domain Number 5 Region: 738-814
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.000000000000445
Family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.005
Further Details:      
 
Domain Number 6 Region: 141-178,266-321
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 0.00000000314
Family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 0.0065
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) WP_013060886.1.91540
Sequence length 1047
Comment multidrug transporter AcrB [Salinibacter ruber]; AA=GCF_000090405.2; RF=na; TAX=761659; STAX=146919; NAME=Salinibacter ruber M8; strain=M8; AL=Complete Genome; RT=Major
Sequence
MNRAIDWFARHGVAANLLTMLLLVGGVVAGGLVVQENFPEFSLDAVEVRVRYPGASPEDV
EDDIVRRVEDRIEGVEGIDRLLGTAADNIGVVTAELKRGTNLDRARTDIKSEVDRVTSFP
ENAEEPVVTEVTNREQVLQVALHGEASLRALKNAAQRAEGDLTRTPQVSYAEVSGVPDEE
ISIEVSRGALRAHGLTLAQVSRIVREGSLDLPAGSIETEDSDITIRTEGQNYTKSDFEDI
VLLSRNDGTNVLLGDVATVVDGFEQNSDLRTRFDGDPAVLLNVFRTGDEQALSVEEAVKT
YLSETLRPTLPRGIEATVWRNSAESLRTRLTIMVENGVLGLVLVLVVLTLFLAPRKAFWT
ASGILLSFVGALIFMQQFGVSINMLSVFGFIIAMGIAVDDAIVVVENVYAEQERTGAPLT
AAVEGTQRVATPVVFAVLTTIAAFAPLLFVGGTIGKFLGDIPTVVIFVLIVSVVEVLFVL
PAHLSHGTGDDGPSTAVGQWLDGIRAGVHDRLVAFVHGPLTTLLRFATRRYGVTLVGGLS
LLVVTFSLVANGYVKNEFFPSIPGNVVTAQLEMPPGTNADETARRAERLRAQGLGVLRDL
EKEADERLLENTYTTVSRQPVASGGRTQAGFTAPRPNVAEVSIEMVDAEARSVPSPVLEE
QWRDTVGTPAGVQSLAFTSTAGGPGGDPVSVQLFAPTVDAMTRAADVVQDTLRRYAGVQD
VTVDWEEKRELSLRMKPAARSLGLTLSDVARQVRAAFFGTESFRLQRGEDEVRVYVRLPA
AQRSAVADLSDYRIRAPGGAEVPLEEVATVSLGYSPTQIDRQDGRRVVTVSADVNPAVTT
GGATTARLERATLPALQAQVPTLSYQFGGQQREQRKAQGSLQIGFLLALFAIYGLLAIPF
RSYVQPLIIMSTIPFAWIGALFGHFLLGYNLILPSIFGIIGLSGVIVNDALVMLDFANEE
RGEGATWRDALVRAGQVRFRPILLTSLTTFFGLAPFILERSVEAQFLVPMAISLGGGILV
GTAVLMLIVPALAMLQRDVVAGLRSLF
Download sequence
Identical sequences D5H5M5
gi|294506224|ref|YP_003570282.1| WP_013060886.1.91540

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