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Domain assignment for WP_015125407.1.5248 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  WP_015125407.1.5248
Domain Number 1 Region: 801-1028
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB transmembrane domain 7.46e-49
Family Multidrug efflux transporter AcrB transmembrane domain 0.00047
Further Details:      
 
Domain Number 2 Region: 300-503
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB transmembrane domain 4.84e-37
Family Multidrug efflux transporter AcrB transmembrane domain 0.00014
Further Details:      
 
Domain Number 3 Region: 42-133
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 1.57e-24
Family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 0.0019
Further Details:      
 
Domain Number 4 Region: 718-803
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 1.14e-17
Family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.0068
Further Details:      
 
Domain Number 5 Region: 191-273
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.00000000000000432
Family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.0043
Further Details:      
 
Domain Number 6 Region: 155-190,276-326
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 0.0000000000000141
Family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 0.02
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) WP_015125407.1.5248
Sequence length 1055
Comment CusA/CzcA family heavy metal efflux RND transporter [Synechococcus sp. PCC 6312]; AA=GCF_000316685.1; RF=na; TAX=195253; STAX=195253; NAME=Synechococcus sp. PCC 6312; strain=PCC 6312; AL=Complete Genome; RT=Major
Sequence
MLNGILKWSIAQRWLVVIGAIIVTILGSYNLTQMPLDVFPQFAPPQVEIQTEAPGLAPEE
VESLVTLPIESAINGTPGIETVRSSSAVGISVVRAIFSWDTDVYRARQLVTERLQQAQTK
LPAGVETPAISPISSPIGTILMYALTVKNEDGATPTTDLMEVRRLVDRTITNQLLAVPGV
SNVLTYGGDIRQYQVLVDPAKLQAFDVSLDDVTLAAEQANLNGAGGFLIGPDQEEIIRGI
GRIESLEDLANSVITSRNGVPIRLGDVAQVQIGAALARGDGSVNGQRAVVMVIDKQPQAD
TPTVTRDVERTMAAIKAGLPEDVEVIETFRQENFIAAATDNVRDSLRDGIIIVSVVMLLF
LMNWRTAVITLSAIPLSVLIGLLILNGLGQGINTMTLGGLAVAIGSVVDDSIVDMENCYR
GLRENQAQGNPKHPLQVVYDTSVEVRTSVIFSTVIIVVVFAPIFTLTGVEGRIFAPMGVA
YLVSILASTFVAMTLSPALCAFLLAPRQLPSDETWVSAFSQRFYRPLLNLAIHKPKRILY
IALGLFLAAMLILPMLGRVFLPEFQERSLVNAMLLYPGSSLEATNRVGLAMQDALKDDPR
FRSVQLRAGRAPGDSDAGGVNLGHLDVELSDLGIKDREGSIETIREEFNKLPGVAPNIGG
FISHRMDEVLSGVRSAIAVKIFGPDLNQLRQIGQDVEAAMRDIPGLVDLQLEPQVPIRQV
QIQFDRAQASRYGLTVGQLAETIETAFNGRVVSQVLQEQQLFDLVVWLQPEARNNIETFR
NLLISTPTGSKIPLAQVAQVNYDTGPNTINRENVSRLLVVSSNVSGRDLRSAVNEIQAKI
AETVTVPSGYVIQYGGQFESEERATQNLILYGGLAIVIIAILMYFAVKSIPAMLMIMINL
PLALAGGVFAIAVTGAVISVSSLVGFVTLFGVAVRNGLLLVDNYNQKFALGLPLKQVIAA
GSMERLVAILMTALTSALGMLPLAWGTGAGKEVLQPLAIVVLGGLFTSTALTLLVLPALY
AQFGRYFLPKTALEPELEEFNPPGPGEPLNVSQVP
Download sequence
Identical sequences K9RVB7
WP_015125407.1.5248 gi|427713784|ref|YP_007062408.1|

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