SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for WP_019829851.1.31964 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  WP_019829851.1.31964
Domain Number 1 Region: 420-664
Classification Level Classification E-value
Superfamily EAL domain-like 5.89e-70
Family EAL domain 0.0034
Further Details:      
 
Domain Number 2 Region: 136-235
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 1.4e-17
Family Heme-binding PAS domain 0.04
Further Details:      
 
Domain Number 3 Region: 699-817
Classification Level Classification E-value
Superfamily CBS-domain pair 0.00000000843
Family CBS-domain pair 0.0044
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) WP_019829851.1.31964
Sequence length 818
Comment ggdef family protein [Vibrio cholerae]; AA=GCF_000387685.1; RF=na; TAX=1235456; STAX=666; NAME=Vibrio cholerae CP1114; strain=CP1114; AL=Contig; RT=Major
Sequence
MSVNVSTVQPQSIGLKTRYAPLDWCYQLASQHMDYDIVMWQSLVGNSRSITKPDDFLEYL
PLTQREHAAGFFVQADSAPQSLNTLLVSAEKLVALVAFSVDEVSSQLVRGTITPLLIFHS
GMESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHS
QHFYVDMWQQLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQIFYIGFTTDLAPHL
DRVLDKQAGDVELLTQLPTLSKFSAQFKQRLPKQQTTTGFVLAIQPKFSSDKYYAQIRRL
AASLAQNRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQ
AVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKTLEK
WVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGLINQ
LDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTLAKNIT
VELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVT
NIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKPLPLS
NLIHASDYRKHLKLTNREADKQSSEITTLQSLAFFTQYRLDPGDPLSLAVEYFNAVQSDV
LLVVTAGECVGLVDRAALNLHLTPTMGTELETAREAAIWRKPVNQIMRTPQVKLAHDTDL
KLLASLLKTNPPPPWVLVEGNKYKGIVTAPRLLAYLAS
Download sequence
Identical sequences WP_019829851.1.23361 WP_019829851.1.31964 WP_019829851.1.32942 WP_019829851.1.43407 WP_019829851.1.48659 WP_019829851.1.67839 WP_019829851.1.93441 WP_019829851.1.94827

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]