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Domain assignment for XP_001147672.1.37143 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_001147672.1.37143
Domain Number 1 Region: 480-696
Classification Level Classification E-value
Superfamily CATH 1.33e-76
Family CATH 0.0019
Further Details:      
 
Domain Number 2 Region: 1841-2015
Classification Level Classification E-value
Superfamily Sec63 N-terminal domain-like 7.61e-61
Family Sec63 N-terminal domain 0.0000000169
Further Details:      
 
Domain Number 3 Region: 1214-1505
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 7.86e-56
Family Tandem AAA-ATPase domain 0.0017
Further Details:      
 
Domain Number 4 Region: 1010-1182
Classification Level Classification E-value
Superfamily Sec63 N-terminal domain-like 1.9e-52
Family Sec63 N-terminal domain 0.00066
Further Details:      
 
Domain Number 5 Region: 477-658
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 9.6e-49
Family Tandem AAA-ATPase domain 0.00052
Further Details:      
 
Domain Number 6 Region: 676-888
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 2.08e-48
Family Tandem AAA-ATPase domain 0.0017
Further Details:      
 
Domain Number 7 Region: 1514-1723
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 8.11e-43
Family Tandem AAA-ATPase domain 0.0015
Further Details:      
 
Domain Number 8 Region: 2016-2128
Classification Level Classification E-value
Superfamily E set domains 2.64e-32
Family Sec63 C-terminal domain-like 0.000000543
Further Details:      
 
Domain Number 9 Region: 1723-1824
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 0.0000000683
Family RecQ helicase DNA-binding domain-like 0.042
Further Details:      
 
Domain Number 10 Region: 888-993
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 0.00000286
Family RecQ helicase DNA-binding domain-like 0.052
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_001147672.1.37143
Sequence length 2136
Comment PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Pan troglodytes]; AA=GCF_000001515.7; RF=representative genome; TAX=9598; STAX=9598; NAME=Pan troglodytes; AL=Chromosome; RT=Major
Sequence
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
Download sequence
Identical sequences A0A2K5KVL9 A0A2K5XLU4 A0A2K6N4M1 A0A2K6QI64 G3QR47 H2P548 H2QIC8 O75643
HR4932 ENSP00000317123 gi|40217847|ref|NP_054733.2| 3jcr_C 5o9z_C 5xjc_D 5yzg_D 5z56_D 5z57_D 5z58_D ENSGGOP00000005082 ENSPTRP00000020959 ENSP00000317123 ENSPPYP00000013456 9598.ENSPTRP00000020959 9600.ENSPPYP00000013456 9606.ENSP00000317123 NP_054733.2.87134 NP_054733.2.92137 XP_001147672.1.37143 XP_003805775.1.60992 XP_004031465.1.27298 XP_009234447.1.23681 XP_010360379.1.97406 XP_011825042.1.47321 XP_011911145.1.92194 XP_016859092.1.92137 XP_017715958.1.44346 ENSPTRP00000020959 ENSP00000317123 ENSPPYP00000013456 ENSGGOP00000005082

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