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Domain assignment for XP_001766783.1.60028 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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No Significant Hits.

Weak hits

Sequence:  XP_001766783.1.60028
Domain Number - Region: 389-484
Classification Level Classification E-value
Superfamily Acid proteases 0.00197
Family Retroviral protease (retropepsin) 0.036
Further Details:      
 
Domain Number - Region: 148-188
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0167
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_001766783.1.60028
Sequence length 624
Comment predicted protein [Physcomitrella patens]; AA=GCF_000002425.3; RF=representative genome; TAX=3218; STAX=3218; NAME=Physcomitrella patens; ecotype=Gransden 2004; AL=Scaffold; RT=Major
Sequence
MEVFPHALKDEYFLEDVDHVTKKLFLEWIERPNKNLQATELLREFERQYSQLSKVEKLTL
EPNKVDLFLQAADGELERKNDRSNILKTIQAPKAPVRTTPPTMPTVQPSTSLSKKADMGM
EEIIRGMRDLQIKLARLEENTSINNSKNVSKQGYVQRCIWCDDASHTRKDCNEFNNMIWQ
GIICWKDGKIALKNREELLQTNFGKGGMRALVQDYLKEHETAARESTSYGARVDDEIGGS
TETSEFWASAVSTMQEGKLPREALLGTATIIRGRTGWEDPVESLSVHAYIAKSQHEALME
EKRRGNFDDTREGNSSKRQTRGDKAREAASQELPVKDTSASLEEKTKETKDKGKSIAYKL
LSDIEAATNLKGVLEERILNAKARATTEVLVKVGDIEEPIVALVDHGSEINLMSKDLYKK
PKWPIDMEHGWTIRAANNTQGELYGACPDVKIWIGDVATEQHFFVQDTMSYPLILGQPYI
TATRMETKVPEDGSAYARVCSQDGRKVVQFLTVPPNHERNRDRLREKPLPKIVEGFKDFG
KLGTLQDDERILGVYEENGLEDSLELITSIGLGDNDKIVEIHSREVYTVLESFQAPEVTV
ETRYKTVDKKVKPVAEPLPEDSKE
Download sequence
Identical sequences A9SK44
3218.JGI80483 XP_001766783.1.60028 jgi|Phypa1_1|80483|fgenesh1_pg.scaffold_87000006

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