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Domain assignment for XP_001772167.1.60028 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_001772167.1.60028
Domain Number 1 Region: 16-90
Classification Level Classification E-value
Superfamily RING/U-box 3.31e-18
Family RING finger domain, C3HC4 0.026
Further Details:      
 
Domain Number 2 Region: 268-296
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000607
Family Retrovirus zinc finger-like domains 0.005
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_001772167.1.60028
Sequence length 784
Comment predicted protein, partial [Physcomitrella patens]; AA=GCF_000002425.3; RF=representative genome; TAX=3218; STAX=3218; NAME=Physcomitrella patens; ecotype=Gransden 2004; AL=Scaffold; RT=Major
Sequence
SVFAKEADALLAIRPIYSEPPPELKCPLCGTIFKDAVMIPCCQYSFCDKCIRDELIAKGK
CPQCESTKFKNDDLLPNINLRQAIDRFLEAQMTTSGASDSFYKQHQLPDVDSGPRKVAAP
AGSRLQIELRKPVISTGAPVQAPPSKEVVVEDAVESSKDKKEKTEQVEGSAVLTLGDEDS
GGAIEGPPSKEYAAETSGKEEAGVSLKEEERQGFVNDEGEAGMISKNIEPLFVKETDGVA
VESEVSKGKKKKKRSRPVQADGAADNIGGGKVRKGERVCYLCGSPDHFARDCIDHGGPGP
GPYGGPHPAMFGPGGMPPMGVPPYGGAYNMEWHGPPMPPHGGPFGYGEGMHGPGPGMMPF
DRPMMPGPGYGAPPFGMPPMYPGIPHHGYMRGPGMMGMMDRPPLSREEFLEVQERQRQER
HRQHRMMEHSEREWSPEALFPRDRERERDGNVRHQSPELESRRLKETRERRPDHYDHVRK
HDVERESGDEFSDDTEYRKTKSGRIERRKAPDRVVVENRHSRKSHLSNDDDVTSLDELKT
RRPVRRGDRDEKLPERDMRRERESSRQHREFVDYSSEHDGPVVPERHDREGSRSLKSRRM
ESSSKRINVSGESRYRSSKREMPEDSGHSDLPPEPQDLRLKLGRKREKERQERRHHVYDD
AETEEIIKGEALEKPRLKRHHSRSKSKGEEPVEYDSEDSRRKQKRKHRKHYDDSIEDRPR
DIREKDVDEPVASRKLKSKGGSNPSSNSIEGTRWQLVDSAGEIDEGHNSHSYHTKRKSQR
SYRS
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Identical sequences A9T0S7
jgi|Phypa1_1|231964|fgenesh2_pg.scaffold_147000048 XP_001772167.1.60028 3218.JGI231964

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