SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for XP_001774945.1.60028 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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No Significant Hits.

Weak hits

Sequence:  XP_001774945.1.60028
Domain Number - Region: 249-287
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0392
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 
Domain Number - Region: 430-519
Classification Level Classification E-value
Superfamily Acid proteases 0.0544
Family Retroviral protease (retropepsin) 0.038
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_001774945.1.60028
Sequence length 831
Comment predicted protein [Physcomitrella patens]; AA=GCF_000002425.3; RF=representative genome; TAX=3218; STAX=3218; NAME=Physcomitrella patens; ecotype=Gransden 2004; AL=Scaffold; RT=Major
Sequence
MRPDLVGQLNAIQLWEHPGLTTGLLANMRPELVWRLNVVPITGVPIPFQAVPSFVPFRDD
CFVKSKLRSLGGVFGGGSSKGQDADRVTKKLFLKWIERPNKNLQATELLRKFKRQYSQLS
KVEKLTLEPNKIDLFLQAADGELQGKLELFLEDKKKDEGLTTKWKNVEDAVGLLTKRERR
KDRSNIPKTVQAPKAPVCTTPPTMPTVQPSTSLSKKADMGMEEIIRGMRDLQIKLARLEE
NTSTNNLKNISKQGYVQRCIWCDDASHARKDCNEFNNMIRQGIICWKVRKIALKDREDLL
QTNFGKGGMRVLVQDYLKERETATRESASYGARVDDDLGGRTKTRKLPREALLRTAATIR
GTTDWKDPVESLLVHAYIAKNQHEALMEEKRRGNFDDMKYIKMKKRLILVTSNQQMKRMD
IINEVTTEVLVKVGDIEEPIVALVDHGSEINLMSKDLYKKQKWPIDMEHGWTIRATNNTL
GELYGACPDIKIWIGDVATEQHFFVQDTTSYPLILGQPYIMATWMETKVLDDGSAYAKRD
YRGIKEEVLSRDEGSFDASFIGILENGNIIYKKVNDFKRKERKRLYNIERELRKLGILQD
DERILGVYEENGLEDSLESITSIGLGDNDKIMEIHSREVYTILESFQAPEDTVETRYKMT
NKKLKLVTRPLPEDSKEQMEEASKEASLRDLMRIGHLFTKETFGELKIGSDSSLLSEEIT
CFKKMLAKQESVERERTNSTTGEPGLKSQLDLILRHSIQVLLPNMRPDLVGQLNAIQLWE
HPGLTTGLLANMRLELVGRLNVVPITGVPIPFQAVPSFMPFQERPFDKRIS
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Identical sequences A9T8P3
jgi|Phypa1_1|89545|fgenesh1_pg.scaffold_184000058 XP_001774945.1.60028 3218.JGI89545

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