SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for XP_001776395.1.60028 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_001776395.1.60028
Domain Number 1 Region: 140-173
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000811
Family Retrovirus zinc finger-like domains 0.0075
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_001776395.1.60028
Sequence length 328
Comment predicted protein [Physcomitrella patens]; AA=GCF_000002425.3; RF=representative genome; TAX=3218; STAX=3218; NAME=Physcomitrella patens; ecotype=Gransden 2004; AL=Scaffold; RT=Major
Sequence
MFVKEAQSITVSASLDRAKVWEECHYDQFLTTSATMIPVQSNYQYPALNGSVGSYPQMIK
TVAHSSANTQGSVNVIPLQALPPQVTTAYAPYFPYQTQESTLVEKQIIPASKDSNEALLL
NLMKKMEEMAINMVKDKEKRQKPTNTRTNVWCSNCQGHDHFVTECPSPSQVLGKIEGINR
GPQDSPVNRVECVHTVLTRSQQKGKGQSHPITDPSHSGPDTGKVLSLDLVVKPNEVPITE
SSVPSGVDLLPLQFQEASYPLKDPLGKGSPKEAQAAVSIPSLILDKRTRIGFSKLDPIGS
SNPSCELALLFLLTPVIGIEQSISVCPG
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Identical sequences A9TCT1
jgi|Phypa1_1|91080|fgenesh1_pg.scaffold_205000040 3218.JGI91080 XP_001776395.1.60028

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