SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for XP_001778310.1.60028 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  XP_001778310.1.60028
Domain Number - Region: 155-193
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0194
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_001778310.1.60028
Sequence length 679
Comment predicted protein [Physcomitrella patens]; AA=GCF_000002425.3; RF=representative genome; TAX=3218; STAX=3218; NAME=Physcomitrella patens; ecotype=Gransden 2004; AL=Scaffold; RT=Major
Sequence
MWSRLRGSILFQAVIFSVPSQGTLFSVNGFLKGKNGGESLTARANFGSKLEDSQWIQDHK
EEDEGLTTKWKNVEDAVGLLTKKERRKDRSNIPKTVQAPKAPVHTTPPTMPTVQPSISLS
KKADMGMEEIIRGMRDLQIKLARLEENTSINNSKNVSKQGYVQRCIWCDDASHTRKDCNE
FNNMIRQGIICWKDGKIALKDREDLLQTNFGKGGMRALVQDYLKEHETVARESASYGARV
DDEIGGSTETKGNSFKRQTRGDKAREATSQELPVKDTSASLGEKTTETKDKGKSIAYKLL
SDIEAATNLKGVLEERILNAKVEFILKEVLRIAKKEFHDVIIDNIKRKRQLMGETGMSHA
IDARICRDEEEVDIGYKQPTNEKNGYNQQVGDIEEPIVALVDHGSEINLMSKDLYKKQKW
PIDMKHGWAIRAANNTRGELYGACPDVKIRIKYVATEQHFFVQDTTSYPLILGQPYITAT
RMETKVLDDGSAYARVRSEDGRKVVQFLIVPPNHERNRDRLREKPLPKIVEGFKDFGEEV
LSRDEGAFDASFIGILENGNIMYKKVHDFKRKERKRLYDIEGQLRKIGTLQDDERILGVY
EENGLEDSLELITSIGLGDNDKIVEIHSREVYTMLESFQAPEVTVETRYKTADKKVKPIA
GPLPEDSKNKWEKHQKKRV
Download sequence
Identical sequences A9TI85
jgi|Phypa1_1|93095|fgenesh1_pg.scaffold_236000025 3218.JGI93095 XP_001778310.1.60028

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]