SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for XP_001780104.1.60028 from NCBI 2017_08 genome

Domain architecture

Domain assignment details

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Strong hits

Sequence:  XP_001780104.1.60028
Domain Number 1 Region: 198-287
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 1.21e-29
Family Canonical RBD 0.00011
Further Details:      
Weak hits

Sequence:  XP_001780104.1.60028
Domain Number - Region: 128-147
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0101
Family Retrovirus zinc finger-like domains 0.0057
Further Details:      

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_001780104.1.60028
Sequence length 288
Comment predicted protein [Physcomitrella patens]; AA=GCF_000002425.3; RF=representative genome; TAX=3218; STAX=3218; NAME=Physcomitrella patens; ecotype=Gransden 2004; AL=Scaffold; RT=Major
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Identical sequences A9TNB3
PP1S271_56V6.1 3218.JGI196691 jgi|Phypa1_1|196691|estExt_gwp_gw1.C_2710054 XP_001780104.1.60028

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