SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for XP_001784891.1.60028 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_001784891.1.60028
Domain Number 1 Region: 135-178
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000977
Family Retrovirus zinc finger-like domains 0.0024
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_001784891.1.60028
Sequence length 299
Comment predicted protein [Physcomitrella patens]; AA=GCF_000002425.3; RF=representative genome; TAX=3218; STAX=3218; NAME=Physcomitrella patens; ecotype=Gransden 2004; AL=Scaffold; RT=Major
Sequence
MFVKESQPVMVAASLVRTKVWEECHYDQLLMVGTTMIPNVGNQVLMTNTMIGSYPRMIAP
SMGNPNSQGVVNATPLQAIPPVATYPSPMAYRQPEVPMNAIINDSNEALLLNLMKEMEEL
AVHMTKDEEKRHKPSNMRPNVWCNNCKGQGHFDTECPSPHQKMGQCMYCGGKHNTANCWY
LLRQQTMILPTVWDGPTHDINSANYRRNKQTTGILGTSGGSDSRSIDKKSAKRQRTNSNI
GEIDTSPGQQTNTKICSIIGRSVTVTTQFDQYIGASTNFTSTNITPIRWTVTPIKGSNF
Download sequence
Identical sequences A9U211
jgi|Phypa1_1|100554|fgenesh1_pg.scaffold_429000009 3218.JGI100554 XP_001784891.1.60028

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]