SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Home > Genomes > NCBI 2017_08 genome > XP_002756642.1.60252

Domain assignment for XP_002756642.1.60252 from NCBI 2017_08 genome

Domain architecture

Domain assignment details

(show help)
Strong hits

Sequence:	XP_002756642.1.60252
Domain Number 1	Region: 100-395
Classification Level	Classification	E-value
Superfamily	L domain-like	5.95e-61
Family	Internalin LRR domain	0.024
Further Details:

Domain Number 2	Region: 355-558
Classification Level	Classification	E-value
Superfamily	L domain-like	2.72e-42
Family	Internalin LRR domain	0.048
Further Details:

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by

Molecular Function
Biological Process
Cellular Component

Cellular Component	IC (bits)	H-Score

Molecular Function	IC (bits)	H-Score

Biological Process	IC (bits)	H-Score

Protein sequence

External link(s)	XP_002756642.1.60252
Sequence length	582
Comment	PREDICTED: leucine-rich repeat protein SHOC-2 [Callithrix jacchus]; AA=GCF_000004665.1; RF=representative genome; TAX=9483; STAX=9483; NAME=Callithrix jacchus; AL=Chromosome; RT=Major
Sequence	MSSSLGKEKDSKEKDPKVPSAKEREKEAKASGGFGKESKEKEPKTKGKDAKDGKKDSSAA QPGVAFSVDNTIKRPNPAPGTRKKSSNAEVIKELNKCREENSMRLDLSKRSIHILPSSIK ELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDSLDNLKKLRMLDLRHNK LREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIRENKIKQLPAEIGELCNL ITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIP RSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSL NMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPED VSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTN NQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALC SKLSIMSIENCPLSHLPPQIVAGGPSFIIQFLKMQGPYRAMV
Download sequence
Identical sequences	A0A287B795 A0A2J8W773 A0A2K5C7R5 A0A2K5Q0K5 F6Q6N0 F7IB91 G1PNN4 G3QZG6 H0X798 H2Q2K4 K9IMG6 L5K0V8 Q5RAV5 Q9UQ13 S7PPZ0 NP_001311265.1.87134 NP_001311265.1.92137 NP_001311266.1.87134 NP_001311266.1.92137 NP_031399.2.87134 NP_031399.2.92137 XP_001927528.1.46622 XP_002756642.1.60252 XP_003787217.1.62490 XP_003825630.1.60992 XP_005602291.1.31192 XP_005671514.1.46622 XP_005671515.1.46622 XP_005874601.1.60319 XP_005874602.1.60319 XP_006088185.1.53796 XP_006088186.1.53796 XP_006778770.1.95426 XP_006778771.1.95426 XP_006920921.1.64745 XP_006920922.1.64745 XP_008142528.1.99482 XP_008538861.1.77740 XP_008949158.1.60992 XP_009008521.1.60252 XP_011362043.1.92234 XP_011362044.1.92234 XP_011362045.1.92234 XP_011362046.1.92234 XP_012305621.1.9421 XP_012305623.1.9421 XP_012305624.1.9421 XP_012305625.1.9421 XP_014706653.1.49734 XP_015451820.1.64745 XP_016067618.1.3490 XP_016067619.1.3490 XP_016067620.1.3490 XP_016774806.1.37143 XP_016872191.1.92137 XP_016872192.1.92137 XP_016872193.1.92137 XP_017355165.1.71028 XP_017355166.1.71028 XP_017355167.1.71028 XP_017834798.1.60252 XP_018890309.1.27298 XP_021522552.1.9421 XP_021522553.1.9421 XP_021522554.1.9421 XP_521602.2.37143 9598.ENSPTRP00000005186 9600.ENSPPYP00000003088 9606.ENSP00000358464 9796.ENSECAP00000010435 9823.ENSSSCP00000011322 ENSPPYP00000003088 ENSECAP00000010435 ENSGGOP00000008275 HR3104 ENSMLUP00000012567 ENSECAP00000010435 ENSP00000358464 ENSPTRP00000005186 ENSCJAP00000035065 ENSP00000265277 ENSOGAP00000011275 ENSP00000358464 ENSPTRP00000005186 ENSPPYP00000003088 ENSMLUP00000012567 gi\|41281398\|ref\|NP_031399.2\| ENSGGOP00000008275 ENSSSCP00000011322 ENSOGAP00000011275 ENSCJAP00000035036 ENSSSCP00000011322

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]