SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for XP_002822951.1.23681 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_002822951.1.23681
Domain Number 1 Region: 122-269
Classification Level Classification E-value
Superfamily C-type lectin-like 5.25e-34
Family C-type lectin domain 0.00000019
Further Details:      
 
Weak hits

Sequence:  XP_002822951.1.23681
Domain Number - Region: 56-147
Classification Level Classification E-value
Superfamily Fibrinogen coiled-coil and central regions 0.0314
Family Fibrinogen coiled-coil and central regions 0.011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_002822951.1.23681
Sequence length 273
Comment PREDICTED: oxidized low-density lipoprotein receptor 1 isoform X1 [Pongo abelii]; AA=GCF_000001545.4; RF=representative genome; TAX=9601; STAX=9601; NAME=Pongo abelii; AL=Chromosome; RT=Major
Sequence
MTFDDLKIQTVKDQPDEKSNGKKAKGLQFLYSPWWCLVAVTLGVLCLGLVVTIMALGMQL
SQVSDLLTQQQANLTHQKNKLEGQISARQQAEEASQESQNELKEMIETLARKLNEKSKEQ
MELHYQNLNLQETLKRVANCSAPCPQDWIWHEENCYLFSSGSFNWEKSQEKCLSLDAKLL
KINNTADLDFIQQAISYSSFPFWMGLSRRNPSYPWLWEDGSPLMPHLFRVRGAVSQTYPS
GTCAYIQRGAVYAENCILAAFSICQKKANLRAQ
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Identical sequences H2NGH5
XP_002822951.1.23681 ENSPPYP00000004866 ENSPPYP00000024690 9600.ENSPPYP00000004866 ENSPPYP00000004866

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