SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_004838421.1.39548 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_004838421.1.39548
Domain Number 1 Region: 8-298
Classification Level Classification E-value
Superfamily WD40 repeat-like 4.79e-60
Family WD40-repeat 0.00012
Further Details:      
 
Weak hits

Sequence:  XP_004838421.1.39548
Domain Number - Region: 595-795
Classification Level Classification E-value
Superfamily ARM repeat 0.00122
Family HEAT repeat 0.082
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_004838421.1.39548
Sequence length 795
Comment PREDICTED: phospholipase A-2-activating protein isoform X1 [Heterocephalus glaber]; AA=GCF_000247695.1; RF=representative genome; TAX=10181; STAX=10181; NAME=Heterocephalus glaber; AL=Scaffold; RT=Major
Sequence
MASSGARYRLSCSLPGHELDVRGLVCCLYPPGAFVSVSRDRTTRLWAPDSPNRGFTEMHC
MSGHSNFVSCVCIIPSSDIYPHGLIATGGNDHNICVFSLDSPVPLYILKGHKDTVCSLSS
GKFGTLLSGSWDTTAKVWLNDKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKTIKLWKA
GRCERTFSGHEDCVRGLAILSETEFLSCANDASIRKWQITGECLEVYYGHTNYIYSISVF
PNCRDFVTTGEDRSLRIWKHGECAQTIRLPAQSIWCCCVLDNGDIVVGASDGIIRVFTES
VDRTASAEEIKAFEKELSQATIDTKTGDLGDINVEQLPGREHLNEAGTREGQTRLIRDGE
NVEAFQWSVSEGRWMKIGDVVGSSGANQQTSGKVLYEGKEFDYVFSIHVNEGGPTYKLPY
NISDDPWMTAYNFLQKNDLNPMFLDQVAKFIIDNTKGQMLGLGNTSFSDPFTGGGRYVPG
SSGSSSTVPTADPFTGAGRYVPGSVSTTAAVTGVDPFTGNSAYQSAGSKTVNIYFPKKEA
VSFDQANPTQILGKLKELNGTAPEEKKLTEDDLVLLEKILSLICDSSSEKPTAQQLQILW
KAINWPEDIVFPALDILRLSIKHPSVNENFCNEKEGAHFSRHLISLLNPKGKPANQLLAL
RTFCNCFVGQAGQKLMMSQRESLISHAIELKSGNNKNIHIALATLTLNYSVCFHKDHNIE
GKAQCLSVISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYASVSE
PAKVNECCRFILNLL
Download sequence
Identical sequences G5BPW7
XP_004838421.1.39548 HGL_H00000380460-2

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]