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  Home > Genomes > NCBI 2017_08 genome > XP_008640263.1.15636

Domain assignment for XP_008640263.1.15636 from NCBI 2017_08 genome

Domain architecture

Domain assignment details

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Strong hits

Sequence:  XP_008640263.1.15636
Domain Number 1 Region: 25-263
Classification Level Classification E-value
Superfamily Calponin-homology domain, CH-domain 1.88e-91
Family Calponin-homology domain, CH-domain 0.000000909
Further Details:      
 
Domain Number 2 Region: 282-403
Classification Level Classification E-value
Superfamily Spectrin repeat 6.81e-36
Family Spectrin repeat 0.0000528
Further Details:      
 
Domain Number 3 Region: 997-1152
Classification Level Classification E-value
Superfamily Spectrin repeat 7.52e-30
Family Spectrin repeat 0.0000235
Further Details:      
 
Domain Number 4 Region: 1525-1681
Classification Level Classification E-value
Superfamily Spectrin repeat 7.86e-30
Family Spectrin repeat 0.001
Further Details:      
 
Domain Number 5 Region: 1632-1786
Classification Level Classification E-value
Superfamily Spectrin repeat 8.64e-30
Family Spectrin repeat 0.0025
Further Details:      
 
Domain Number 6 Region: 627-730
Classification Level Classification E-value
Superfamily Spectrin repeat 2.28e-28
Family Spectrin repeat 0.00016
Further Details:      
 
Domain Number 7 Region: 1209-1362
Classification Level Classification E-value
Superfamily Spectrin repeat 2.88e-28
Family Spectrin repeat 0.00045
Further Details:      
 
Domain Number 8 Region: 1844-1998
Classification Level Classification E-value
Superfamily Spectrin repeat 1.65e-27
Family Spectrin repeat 0.0021
Further Details:      
 
Domain Number 9 Region: 725-842
Classification Level Classification E-value
Superfamily Spectrin repeat 3.8e-24
Family Spectrin repeat 0.00034
Further Details:      
 
Domain Number 10 Region: 412-515
Classification Level Classification E-value
Superfamily Spectrin repeat 2.36e-23
Family Spectrin repeat 0.00032
Further Details:      
 
Domain Number 11 Region: 516-624
Classification Level Classification E-value
Superfamily Spectrin repeat 3.4e-22
Family Spectrin repeat 0.00036
Further Details:      
 
Domain Number 12 Region: 1325-1436
Classification Level Classification E-value
Superfamily Spectrin repeat 1.05e-18
Family Spectrin repeat 0.0008
Further Details:      
 
Domain Number 13 Region: 837-938
Classification Level Classification E-value
Superfamily Spectrin repeat 2.02e-18
Family Spectrin repeat 0.0032
Further Details:      
 
Domain Number 14 Region: 1979-2064
Classification Level Classification E-value
Superfamily Spectrin repeat 0.000000000000157
Family Spectrin repeat 0.0016
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_008640263.1.15636
Sequence length 2151
Comment PREDICTED: spectrin beta chain, non-erythrocytic 1 isoform X3 [Corvus brachyrhynchos]; AA=GCF_000691975.1; RF=representative genome; TAX=85066; STAX=85066; NAME=Corvus brachyrhynchos; AL=Scaffold; RT=Major
Sequence 
MELQKSTSMPGPLSPGYAAQVPYNYNQLEGRFKQLQDEREAVQKKTFTKWVNSHLARVSC
RITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQFLKEQRVHLENM
GSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNV
NIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDP
EDISVDHPDEKSIITYVVTYYHYFSKMKALAVEGKRIGKVLDNAIETEKMIEKYESLASD
LLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKM
RANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQEKLEQLARRFDRKAAM
RETWLSENQRLVSQDNFGFDLPAVEAATKKHEAIETDIAAYEERVQAVVAVAKELETENY
HDIKRITARKDNVIRLWEYLLELLRARRQRLEMNLGLQKIFQEMLYIMDWMDEMKVLLLS
QDYGKHLLGVEDLLQKHALVEADIAIQAERVRGVNASAQKFATDGEGYKPCDPQVIRDRV
AHMEFCYQELCQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQILSSDDYGKDLTSV
VRLLSKHKAFEDEMSGRSGHFQQAIKEGEDMIAEEHFGSEKIRERIKDIREQWANLEQLS
AIRKKRLEEASLLHQFQADADDIDAWMLDILKIVSSNDVGHDEYSTQSLVKKHKDVAEEI
ASYRPTIDSLHEQAKALPQEHAGSPDVQGRLSGIEERYKEVAELTRLRKQALQDTLALYK
MFSEADACELWIDEKEKWLNNMQIPEKLEDLEVIQHRFESLEPEMNNQASRVAVVNQIAR
QLMHSGHPGEKIKAQQDKLNTRWSQFRELVDRKKDALLSALSIQNYHLECNETKSWIREK
TKVIESTQDLGNDLAGVMALQRKLTGMERDLVAIEAKLSDLQKEAEKLESEHPDQAQAIL
SRLAEINDVWEEMKTTLKNREESLGEASKLQQFLRDLDDFQSWLSRTQTAIASEDMPNTL
TEAEKLLTQHENIKNEINNYEEDYQKMRDMGEMVTQGQTDAQYMFLRQRLQALDTGWNEL
HKMWENRQNLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMPTTLEGAEAAIKKQEDF
MTTMDANEEKINAVVETGRRLVSDGNINSDKIQEKVDSIDDRHRKNREAASELLMRLKDN
RDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQAFMAELASNKEWLEKIE
KEGMQLIAEKPETEAVVKEKLTGLHQMWDELESTTQTKAQRLFDANKAELFTQSCADLDK
WLNGLESQIQSDDYGKDLTSVNILLKKQQMLENQMDVRKKEIEELQSQARALSQEGKSTD
EVDGKRLTVEKKFLELLEPLNERKANLLASKEIHQFNRDVEDEILWVGERMPIATSTDHG
HNLQTVQLLIKKNQTLQKEIQGHQPRIDDIFERSQNIITESSPNAEVIQQRLADLKQLWN
LLIEETEKRHKRLEESHRAQQYYFDAAEAEAWMSEQELYMMSEEKAKDEQSAVSMLKKHQ
ILEQAVEDYAETVHQLSKTSRTLVADNHPESERISMRQSKVDKLYAGLKDLAEERRGKLD
ERHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERV
DTVNHMADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAK
EVLGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYA
GDKADDIQKRENEVLEAWKALLDACEGRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIE
AQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQL
TEKRKEMIDKWEDRWEWLRLILEVHQFSRDASVAEAWLLGQEPYLSSREIGQSVDEVEKL
IKRHEAFEKSAATWDERFAALERLTTLELLEVRRQQEEEERKRQPPTPETKAEEDGDSQQ
QWDGTKGEQVSQNGLPSDQESPRVSYRSQTYQNYKNFISRRTANDRSWSGL
Download sequence
Identical sequences XP_008640263.1.15636

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.