SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for XP_009570172.1.62272 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_009570172.1.62272
Domain Number 1 Region: 481-736
Classification Level Classification E-value
Superfamily YWTD domain 3.14e-55
Family YWTD domain 0.00000515
Further Details:      
 
Domain Number 2 Region: 180-410
Classification Level Classification E-value
Superfamily YWTD domain 1.29e-48
Family YWTD domain 0.00000251
Further Details:      
 
Domain Number 3 Region: 783-1042
Classification Level Classification E-value
Superfamily YWTD domain 2.75e-39
Family YWTD domain 0.0000568
Further Details:      
 
Domain Number 4 Region: 1-129
Classification Level Classification E-value
Superfamily YWTD domain 6.8e-29
Family YWTD domain 0.0000876
Further Details:      
 
Domain Number 5 Region: 1173-1208
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000432
Family LDL receptor-like module 0.0015
Further Details:      
 
Domain Number 6 Region: 1135-1170
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000124
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 7 Region: 1094-1134
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000157
Family LDL receptor-like module 0.00082
Further Details:      
 
Domain Number 8 Region: 436-482
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000000497
Family EGF-type module 0.014
Further Details:      
 
Domain Number 9 Region: 739-784
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000321
Family EGF-type module 0.031
Further Details:      
 
Domain Number 10 Region: 134-177
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000158
Family EGF-type module 0.011
Further Details:      
 
Domain Number 11 Region: 1051-1104
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000875
Family EGF-type module 0.012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_009570172.1.62272
Sequence length 1453
Comment PREDICTED: low-density lipoprotein receptor-related protein 5 isoform X3 [Cuculus canorus]; AA=GCF_000709325.1; RF=representative genome; TAX=55661; STAX=55661; NAME=Cuculus canorus; AL=Scaffold; RT=Major
Sequence
MYWTDWGETPRIERAGMDSSTRKIIVDSDIYWPNGLTIDLDEQKLYWADAKLSFIHRANL
DGSFRQKVVEGSLTHPFALTLSGDTLYWTDWQTRSIHACNKRTGEKRREILSALYSPMDI
QVFSPDRQPYYHTPCEENNGGCSHLCLLSPRDPFYSCACPTGVQLEDDGRTCKSGAEEVL
LLARRTDLRRISLDMPDFTDIILQIDNIRHAIAIDYDPVEGYIYWTDDDVRAIRRAYFDG
SGAQTLVTTEINHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRKILVSENLDEPRAI
VLNPVMGYMYWTDWGESPKIECAYLDGSERRVLVNTSLGWPNGLALDIEKDKLYWGDAKT
DKIEVINVDGTMRKTLLEDKLPHIFGFTLLGDYIYWTDWQRRSIERVHKIKASRDIIIDQ
LPDLMGLKATSVTKVFGTNSCAENNGGCSHLCFFTPQEIKCACPIGLELLSDMKTCIIPE
AFLVFTSRAAIHRISLETNNNDVAIPLTGVKEASALDFDVSDNRIYWTDVSLKTISRAFM
NGSSVEHVVEFGLDYPEGMAVDWMGKNLYWADTGTNRIEVARLDGQYRQVLVWKDLDNPR
SLALDPTKGYMYWTEWGGKPRIVRAYMDGTNSITLVDKVGRANDLTIDYADQRLYWTDLD
TSMIESSNMLGQEREIIADDLPHPFGLTQYSDYIYWTDWNLHSIERADKTSGKNRTLIQG
HLDFVMDILVFHSSRQDGLNDCVQNNGHCGHLCLAIPNGFRCGCAAHYALDPNSGNCSSP
ASFLLFSQKSAISRMVPDDQQSPDIILPMHGLRNVKAIDYDPLDKLIYWVDGRQNIIKRA
KDDGTQPFTVMGTPNQSQNPEKQPHDLSIDIYSHTLYWTCEATNSVNVHRLNGESIGMVL
RGDHDKPRAIVVNAERGYMYFTNMQERAPKIERAALDGTEREVLFTTGLIRPVALVIDNK
LGKLFWVDADLKRIESCDLSGANRVTLEDSNILQPMGLTVLGNHLYWIDRQQQMIERVEK
MNGYKRTRIQGRIAHLTGIHAVEELDMEEFSVHPCSRDNGGCSHICIAKGDGTPRCSCPE
HLVLLQNLLTCGEPPTCSPDQFTCATGEIDCIPMAWRCDGFPECDDQSDEDNCPICSASQ
FQCEKGQCIDAHLRCNGEIDCQDKSDEADCDALCLPNQFRCASGQCILVKQQCDSFPDCI
DGSDELMCEKSKPASDESQPHSSAIGPVIGIILSLFVMGGMYFVCQRVVCQRYTGPNSPF
PHEYVSGTPHVPLNFIAPGSSQHGTFTGISCGKSMISSMSLVGGSSGAPLYDRNHVTGAS
SSSSSSTKATFYPQILNPPPSPATDRSLYNAEMFYSSNIPSTTRSYRPYLIRGIAPPTTP
CSTDVCDSDYTTSRWKANKYYIDLNSDSDPYPPPPTPRSQYMSAEESCPPSPATERSYFH
LYPPPPSPCTDSS
Download sequence
Identical sequences XP_009570172.1.62272

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]