SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for XP_013890092.1.33752 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_013890092.1.33752
Domain Number 1 Region: 638-893
Classification Level Classification E-value
Superfamily YWTD domain 6.54e-55
Family YWTD domain 0.00000366
Further Details:      
 
Domain Number 2 Region: 25-285
Classification Level Classification E-value
Superfamily YWTD domain 8.63e-53
Family YWTD domain 0.00000143
Further Details:      
 
Domain Number 3 Region: 337-575
Classification Level Classification E-value
Superfamily YWTD domain 1.44e-52
Family YWTD domain 0.00000412
Further Details:      
 
Domain Number 4 Region: 941-1200
Classification Level Classification E-value
Superfamily YWTD domain 5.89e-40
Family YWTD domain 0.0000333
Further Details:      
 
Domain Number 5 Region: 1331-1370
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000301
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 6 Region: 1251-1292
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000223
Family LDL receptor-like module 0.00099
Further Details:      
 
Domain Number 7 Region: 896-942
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000151
Family EGF-type module 0.02
Further Details:      
 
Domain Number 8 Region: 594-640
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000161
Family EGF-type module 0.0062
Further Details:      
 
Domain Number 9 Region: 1293-1328
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000275
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 10 Region: 291-331
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000093
Family EGF-type module 0.0054
Further Details:      
 
Domain Number 11 Region: 1210-1262
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000698
Family EGF-type module 0.018
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_013890092.1.33752
Sequence length 1621
Comment PREDICTED: low-density lipoprotein receptor-related protein 6-like isoform X1 [Austrofundulus limnaeus]; AA=GCF_001266775.1; RF=representative genome; TAX=52670; STAX=52670; NAME=Austrofundulus limnaeus; strain=Quisiro; AL=Scaffold; RT=Major
Sequence
MGVSLRSLLLLWTFCCLVRGPAGEPLLLYANRRDLRIVDVEHEKTNGTVVVEGLEDAAAV
DYVYSQGLVYWSDVSEEAIKRTFFNQSGHSVVQTVLPGLTSPDGLACDWLGRKLYWTDSE
ANRIEVAELDGSLRKVLFWQELDQPRAIALDPERGFMYWTDWGEVPKIERAGMDGTNRSI
IIDKDINWPNGLTLDYSELQLYWADAKLNFIHRADLDGSARKVVIKGDLPHPFALTLFQN
TLFWTDWTTHSIHSCSKLTGQNQRLVHSNIFSPMDIHVFSPQRQPVSASTWCSVNNGGCS
HLCLLSPSRPFYRCACPTGVQLLEDSKTCRDGATQMLLLARRTDLRRISLDTPDFTDLIL
QVEDIRHAIAIDYDPVEGYVYWTDDDVKAIRRALLDGSHAQFVVTSQVSHPDGIAVDWIA
RNLYWTDTGTDRIEVTRLNGTMRKILISEDLDEPRAIVLDPTAGYMYWTDWGEVPKIERA
NMDGTERLVMVNTSLGWPNGLALDYNEQKIYWGDAKTDRIEVMNMDGSARRVLVKDRIPH
IFGFTLLDDFIYWTDWQSRSIERVHKHTAERETIIDQLPDLMGLKATKVHQAFGTNPCAD
SNGGCSHLCLFTPHGVQCDCPIGLELIADMRTCIIPEAFLLFSRHTDIRRISLETNNNNV
AIPLTGVKEASALDFDVTDNRIYWTDITLKTISRAFMNGSALEHVVQFGLDYPEGMAVDW
LGKNLYWADTGTNRIEVAKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKID
RAAMDGTGRVTLVADVGRANGLTIDYSERRLYWTDLDTTLIESSNMLGQDREVIADDLPH
PFGLTQFQDYIYWTDWSQRSIERANKTSGQNRTLIQGHLDYVMDILVFHSSRQGGWNTCA
STNGHCSHLCLAVPIRGFVCGCPAHFSLNSDNKTCNAPTSFLLFSQKNSINRMVIDEQQS
PDIILPIHNLKNVRAIDYDPLDKQLYWIDSKQNVIRRTQEDGNQSTTVVSSFVVAPGPGL
QLFDLSIDIYSRFIYWTSEVTNVINVTRTDGSRVGVVLRGEHDKPRAIVVNPERGYMYFT
NLQERSPKIERAALDGTEREVLFFSGLGKPVALAIDDEVGKLFWVDSDLRRIESSDLSGA
NRVVIADSNILQPVGLTVFGNHLYWIDKQQQMIERIDKTTREGRTKVQARVAYLSDIHAV
QELDMKDYSKHPCTNDNGGCSHICVVKGDGTTRCSCPIHLVLLPDELTCGEPPTCSPKQF
TCRSGEVDCIPNTWRCDGYVECDDSSDEEDCPVCSESEFQCDSRQCIDXSLRCNGEVNCQ
DKSDENECEVRCPADQFSCSNGQCIGKHKKCDHNMDCSDNSDEIGCYPTEEPQPSSNNTI
SSIVGVVMALFVVGAIYFVCQRVLCPQMKDDGETVTNDFVVHGPSVPLGYVPHPSSLSSS
LPGMSRGKSVIGSLSIMAGGSSGPPYDRAHVTGASSSSSSSTKGTYFPPILNPPPSPATV
RSQYTLEFGYSSNSPSTHRSYSYRPYTYRHFAPPTTPCSTDVCDSDYTPGRRAPLRPAAA
SKGYASDLNYDSEPFPPPPTPRSQYLSAEENCESCPPSPYTERSYSHHLYPPPPSPCTDS
S
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Identical sequences A0A2I4DCZ1
XP_013890092.1.33752

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