SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_017566830.1.86671 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_017566830.1.86671
Domain Number 1 Region: 18-409
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like I 1.11e-55
Family L-arabinose binding protein-like 0.0037
Further Details:      
 
Domain Number 2 Region: 415-564,681-819
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like II 6.52e-52
Family Phosphate binding protein-like 0.000000000229
Further Details:      
 
Domain Number 3 Region: 571-676,710-738
Classification Level Classification E-value
Superfamily Voltage-gated potassium channels 0.0000000124
Family Voltage-gated potassium channels 0.012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_017566830.1.86671
Sequence length 970
Comment PREDICTED: glutamate receptor ionotropic, NMDA 1 isoform X1 [Pygocentrus nattereri]; AA=GCF_001682695.1; RF=representative genome; TAX=42514; STAX=42514; NAME=Pygocentrus nattereri; AL=Scaffold; RT=Major
Sequence
MRLLLLAALFSCSCVRGGCEPKVVNIGAVLSQKRYEQVFKDAVAQANLVYGRDKFKLTAI
SVTHKANAIQMALSVCEDLISSQVYAILVSHPPQSSDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKADKVLQFNQETNLTALLLEAKELEARVIILSA
SEEDAAAVYKTARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHISD
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKYAHYSILNYQKSRLIQVGIYNGTQVVLNKQRKIIWPGGETERPRGFQMSTRLKIVT
IHQEPFVYVKPTMQDGTCREEFTPNGVLIKKVICTGPNETIPGNTTGRPIVPQCCYGFCI
DLLIKLAMTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGLADMIVAPLTIN
NERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLL
DRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFA
MIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELS
TMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGI
GMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLV
AGGIAAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDNKESSGSQVAGAAGTP
SLPSSSVGTQDDRKSGRAESDPKKKPSFRSISTTLASSIKRRRSSKDTQYPPTDISGQLN
LSDPSVSTVV
Download sequence
Identical sequences XP_017566830.1.86671

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]