SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_019202473.1.78416 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_019202473.1.78416
Domain Number 1 Region: 441-702
Classification Level Classification E-value
Superfamily YWTD domain 5.36e-58
Family YWTD domain 0.0000000417
Further Details:      
 
Domain Number 2 Region: 324-436,707-765
Classification Level Classification E-value
Superfamily Growth factor receptor domain 1.18e-17
Family Growth factor receptor domain 0.015
Further Details:      
 
Domain Number 3 Region: 27-65
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000034
Family LDL receptor-like module 0.00053
Further Details:      
 
Domain Number 4 Region: 237-274
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000128
Family LDL receptor-like module 0.00056
Further Details:      
 
Domain Number 5 Region: 271-313
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000301
Family LDL receptor-like module 0.00034
Further Details:      
 
Domain Number 6 Region: 63-105
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000458
Family LDL receptor-like module 0.001
Further Details:      
 
Domain Number 7 Region: 152-187
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000812
Family LDL receptor-like module 0.0012
Further Details:      
 
Domain Number 8 Region: 187-224
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000157
Family LDL receptor-like module 0.00069
Further Details:      
 
Domain Number 9 Region: 108-146
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000275
Family LDL receptor-like module 0.0008
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_019202473.1.78416
Sequence length 877
Comment PREDICTED: low-density lipoprotein receptor-related protein 8 isoform X8 [Oreochromis niloticus]; AA=GCF_001858045.1; RF=representative genome; TAX=8128; STAX=8128; NAME=Oreochromis niloticus; AL=Chromosome; RT=Major
Sequence
MWTEVGKLVLLHLLLLELHCAKGTHTQSECETGQFQCKSGACIPIVWRCDGDDDCPDSSD
EENCPKKTCAATDFTCKNGQCLPARWRCDGEVECADGSDEADSICSRQTCPPEKFDCGGA
ASKCVSLSWRCDGERDCENGADEEQCAADAKACPSKDFQCRNGKCVAPIFVCDGDDDCGD
ASDEEKCSAPTCGHHEFRCNDSECIPALWSCDGDPDCKDKSDESMERCSRRTEPQKPRCL
VTEFQCGSGECVHLNWKCDGEADCKDKSDEANCPLLTCRPDEFQCGDGTCIHGTKQCNKV
HDCPDYSDEAGCVNVTKCDGPKKFRCKNGECIDSSKVCDNVKDCKDWSDEPVKECGLNEC
TDNNGGCSHICKDQRIGYECDCPSGYKLLDKKTCGDIDECENPDACSQICINYKGDYKCE
CYEGYEMDPASKTCKAVGKSPYLLFTNRHEIRRIHLLKSEYTQVVPTLKNAVALDVDVST
NKMFWCDLYHQKIYSAYINKASDSSQQVTLIDSLHSPEGLAVDWVHKNIYWTDSGNKSIS
VATGDGRKRKMLITTELNEPRAIAVDPHQGFMYWSDWGGQAKIEKAGMNGVDRQILVSEH
IEWPNGITLDLSNRRLYWVDSKLHLLSSVDFNGDNRKVLLSSHHHLGHPFALTVFEDRVY
WTDLEDEAIYSANRLTGHDVSKVAEDLNNPLDLVVFHEQRQPKGPDTCNMGTLPNGGCEY
LCLKAPQITDHSPKYTCACPDGMELGPDMRRCAITASDHYLIGNNITVAVLGIVIPIVPI
LATVVIGLLCTGGYLVWRNWRRKNTKSMNFDNPVYRKTTEDDDDEIHIGRHSESIGHVYP
AVSGSHSQPFIALPLGGGVTDNNSHWYSGAPMLSSAK
Download sequence
Identical sequences XP_019202473.1.78416

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]