SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for XP_020861728.1.61212 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_020861728.1.61212
Domain Number 1 Region: 122-155
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000628
Family Retrovirus zinc finger-like domains 0.0054
Further Details:      
 
Weak hits

Sequence:  XP_020861728.1.61212
Domain Number - Region: 100-207
Classification Level Classification E-value
Superfamily HydA/Nqo6-like 0.000392
Family Nickel-iron hydrogenase, small subunit 0.012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_020861728.1.61212
Sequence length 240
Comment zinc finger CCHC domain-containing protein 24 [Phascolarctos cinereus]; AA=GCF_002099425.1; RF=representative genome; TAX=38626; STAX=38626; NAME=Phascolarctos cinereus; AL=Contig; RT=Major
Sequence
MSLLSAIDTSAASVYQPAQLLNWVYLSLQDTHQASAFDAFRPEPAGASHPELGYGKGSPE
QLGSPLNSSYLNSFLQLQRGEALSSSLYKSASPYGSLNNIVDGLSSLTEHFSDLSLSSEA
RKPSKRPPPNYLCHLCFNKGHYIKDCPQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWMS
GNSWANMGQECIKCHINVYPHKQRPLEKPDGLDVSDQSKEHPQHLCEKCKVLGYYCRRVQ
Download sequence
Identical sequences F7D4T0
ENSMODP00000001350 ENSMODP00000001350 XP_001364902.1.35504 XP_020861728.1.61212 13616.ENSMODP00000001350

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]