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Domain assignment for YP_001313099.1.44884 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YP_001313099.1.44884
Domain Number 1 Region: 298-500
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB transmembrane domain 3.14e-49
Family Multidrug efflux transporter AcrB transmembrane domain 0.00000273
Further Details:      
 
Domain Number 2 Region: 805-1027
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB transmembrane domain 5.1e-41
Family Multidrug efflux transporter AcrB transmembrane domain 0.0000107
Further Details:      
 
Domain Number 3 Region: 565-671
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 2.62e-26
Family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 0.00066
Further Details:      
 
Domain Number 4 Region: 39-133
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 1.88e-24
Family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 0.0000653
Further Details:      
 
Domain Number 5 Region: 137-183,276-332
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 1.96e-24
Family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 0.0024
Further Details:      
 
Domain Number 6 Region: 184-273
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 3.53e-21
Family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.00025
Further Details:      
 
Domain Number 7 Region: 722-806
Classification Level Classification E-value
Superfamily Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 1.57e-20
Family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.00069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) YP_001313099.1.44884
Sequence length 1065
Comment hydrophobe/amphiphile efflux-1 (HAE1) family protein (plasmid) [Sinorhizobium medicae WSM419]; AA=GCF_000017145.1; RF=reference genome; TAX=366394; STAX=110321; NAME=Sinorhizobium medicae WSM419; strain=WSM419; AL=Complete Genome; RT=Major
Sequence
MISEIFIDRPRFAAVISIVLTLAGLIALTRLPVAQFPDIVPPQVSITASYPGAGADVVEA
TVAQPIESKVVGVDDMLYMKSTSGADGTYSLTVTFAVGTDPDIATVNVQNRVALAEPVLP
AEVKQSGVSVQKRSSSLMQVIAIHGENDEFDNLFLSNYATINVLDTIKRVPGVGDATLFG
AQDYSMRIVLDIDRLTNLGLTPTDVINALKAQNVQAAIGRIGAQPMTDDPLFQLNIQTQG
RLTDPAQFGDVVLRAGADGSFVRIRDVAHVELGSVSSDSTARINGKPVAMIGTYQAPGAN
ALAATEGVQQALERLSAAFPEGLTYSVSYDTSDFVQASVENVEHTLLEAFALVIIVVFLF
LGNWRATLIPLIAVPVALVGTFAVILAMGFSLNTVSLLALVLAIGIVVDDAIVVVENVER
VMEENPGMSAAEASRLAMGEITGAIVAITLVLLSVFVPVAFIPGLSGQLFQQFAVAVSVS
MVISAINALTLSPALCAILLKPHHGPKRGVLGWISRGIDRTRNGYAHLAGGIARRAILGL
VLLAVAIGASGWLFRIVPTGFLPSEDQGAFFAEIRLPEGASFNRTDAVVRQVESLLGSIE
GVANVTTVTGYSFLDGIAKSSSAFAIVTMKPFAERESETASVNAAIATVMAQGAAIRNAQ
VFAFNLPPIIGLGTGSGFEYQLLDLQGRSPAELAATAGGLMVAANQNPQLGPTFSTYSAS
SPQLYLDLDRDRLQALGVSVSDLFATLQGTLGSYYVNDFNLFGRSWKVTMQAAETDRDAV
EDISRLHVRNAAGDMVPVASVARVNYIVGPQSIVRYNNYRSITLNGQPAPGVSSGQALAA
MEQISAATLPPGYSFEWTGTALQELEAAGQTTVILALAVFFAYLFLVALYESWTIPIPVL
LSVSVGVAGALVAVLLAGLSFDIYAQIGLVVLIALASKNAILIVEFAKFQREKGVPIVDA
AVEGARTRFRAVMMTSFAFIVGLVPLVTAEGAGMLSRRAVGTGVAGGMLAASLLGIFIIP
ALYVVFQWLRERGHKLAGLSSHAAVEAPRKGELEESIERDRNVAD
Download sequence
Identical sequences A6UHN6
gi|150376503|ref|YP_001313099.1| YP_001313099.1.44884 366394.Smed_4361 gi|150376503|ref|YP_001313099.1|NC_009620

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