SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for ENSMODP00000039955 from Monodelphis domestica 69_5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSMODP00000039955
Domain Number 1 Region: 129-242
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 4.32e-19
Family Retrovirus capsid protein, N-terminal core domain 0.0019
Further Details:      
 
Domain Number 2 Region: 378-405
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000586
Family Retrovirus zinc finger-like domains 0.0053
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSMODP00000039955   Gene: ENSMODG00000028108   Transcript: ENSMODT00000043059
Sequence length 425
Comment pep:novel chromosome:BROADO5:5:202110934:202112235:1 gene:ENSMODG00000028108 transcript:ENSMODT00000043059 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MQAQLEDLKSFLQDQLANNHSTRNRPVSEPLNEEISFPEIEMENTFPIAQLTDCFSHVVQ
ILSEFNPQNPSPAIPASHVPSPTENQIPMQGRSCPPRETCPCQTDPQVQNSTRGLFPLRE
VPEIGWNGDVVTLRHRIPFTPQEINEFTRNIPTYEQDPFLVTKKMGDIFFQYNLSYKDVE
SLPQAFLSEREKNKIIAHVNKTRGRNAAHWPSQDPEWDYNNPEDYLQLYRCREAILTAMK
ECADSTDKWMELEKIKQKEDETPSRFMDRIIEFGDRYLDWDLTKESSLRQVRRIFVNNSC
KAIKNYFKTQCPRWSDMDLEELRKTAIYVLKGNEEKEEENNDMEEMKKKIRYLIDRITKL
ESGHDNEPTTIAPLQKSNYQFITCHFCGKKGHNMMDCRTFLKMFGRNTQFNNSFRNNNYR
NDDNG
Download sequence
Identical sequences K7E2F4
ENSMODP00000039955 ENSMODP00000039955

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]