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Domain assignment for 6cna_B from Protein Data Bank

Domain architecture


Domain assignment details

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Strong hits

Sequence:  6cna_B
Domain Number 1 Region: 33-811
Classification Level Classification E-value
Superfamily PDB 7.52e-267
Family PDB 0.0000000924
Further Details:      
 
Domain Number 2 Region: 608-764
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like II 6.4e-65
Family Phosphate binding protein-like 0.0019
Further Details:      
 
Domain Number 3 Region: 372-396,423-521
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like II 1.4e-55
Family Phosphate binding protein-like 0.01
Further Details:      
 
Domain Number 4 Region: 39-359
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like I 2.64e-26
Family L-arabinose binding protein-like 0.061
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 6cna_B
Sequence length 812
Comment mol:protein length:812 Glutamate receptor ionotropic, NMDA 2B
Sequence
SIGIAVILVGTSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRK
IQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQ
ASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGD
CKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPSEF
PTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSN
MLNRYLINVTFEGRDLSFSEDGYQMHPKLVIILLNKERKWERVGKWKDKSLQMKYYVWPR
MCPETEEQEDDHLSIVTLEEAPFVIVESVDPLSGTCMRNTVPCQKRIISENKTDEEPGYI
KKCCKGFCIDILKKISKSVKFTYDLYLVTNGKHGKKINGTWNGMIGEVVMKRAYMAVGSL
TINEERSEVVDFSVPFIETGISVMVSRSNGTVSPSAFLEPFSACVWVMMFVMLLIVSAVA
VFVFEYFSPVGYNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVS
VWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLSDKKFQRPNDFSPPFRFGTVPNGSTER
NIRNNYAEMHAYMGKFNQRGVDDALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGS
GKVFASTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEELEALWLTGICHNEKNEVMSSQL
DIDNMAGVFYMLGAAMALSLITFISEHLFYKS
Download sequence
Identical sequences 6cna_B 6cna_D

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