SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|428303525|ref|YP_007113016.1|NC_019727 from NCBI plasmid sequences

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|428303525|ref|YP_007113016.1|NC_019727
Domain Number 1 Region: 4-264
Classification Level Classification E-value
Superfamily Protein kinase-like (PK-like) 3.69e-55
Family Protein kinases, catalytic subunit 0.00013
Further Details:      
 
Domain Number 2 Region: 1347-1528
Classification Level Classification E-value
Superfamily GAF domain-like 3.27e-25
Family GAF domain 0.0056
Further Details:      
 
Domain Number 3 Region: 1717-1973
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 8.04e-18
Family RecA protein-like (ATPase-domain) 0.038
Further Details:      
 
Domain Number 4 Region: 294-573
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 3.55e-17
Family Extended AAA-ATPase domain 0.055
Further Details:      
 
Domain Number 5 Region: 1511-1639
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 0.00000000000177
Family Flavin-binding PAS domain 0.076
Further Details:      
 
Weak hits

Sequence:  gi|428303525|ref|YP_007113016.1|NC_019727
Domain Number - Region: 1238-1299
Classification Level Classification E-value
Superfamily TPR-like 0.0012
Family Tetratricopeptide repeat (TPR) 0.025
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|428303525|ref|YP_007113016.1|NC_019727
Sequence length 2083
Comment PAS/PAC sensor protein [Calothrix sp. PCC 6303 plasmid pCAL6303.01]
Sequence
MRAIAEYHISQKIYESDNSLVYRANLKRDNQPIILKILKENYPTPSELTRYKQEYEIIRH
LNVDSIIKAYDLQRYENSLVMFLEDFGGKSLKLLMSERRFSIEEIFIIAIKTSESLAAIH
AANIIHKDINPSNIVYNPETKQLKIIDFGISTRLFQENQTLCNLNQLEGTLAYIAPEQTG
RMNRGIDYRSDFYSLGATFYELLTHQLPFATTDPIELVHCHLAQQADPPHTLIPTIPLTV
SKIIMKLLAKTPEERYQSAWGLKADLETCFKQWQIQGQILPFPLGEQDISDKFHIPKKLY
GREQEVSQVLDTFERVSQGTTEMILVAGYSGIGKSALVQEIHKPIVRQRGYFITGKFEQF
KRDIPYAAISTAFQDLIRQLLSESDADIENWKAKILEVLEPNGQVIIDVIPELEKIIGKQ
PSVEKLGANEAQNRFNLSFQRFISVFSQQEHPLVIFLDDLQWADLPSLKLIEQLITDFDS
KYLLIIGAYRNNEVNPTHALILTLESIKKAGVRVNEVSLKPLKLEQINLLLADTLLCSTE
MSTPLAELLANRTQGNPFFLTQLLKSLYDENLISFDYTGRSWCWNIDQILKTGITDNVID
LMVSKINKLSENTRNALKLAACIGNRFNIELLSSIINKSKTSIAQDIQPALQEGLIIPLS
YDYKIPLLWEQEEISSDSSAVSSNFIPSFPSVIPYKFLHDRIQQAAYSLIAEEEKKLIHL
QVGRLLLKNMRKDNNEENIFDIVNQLNEAASLITDQLEKDELAQLNLYVGKKAKASAAYE
PALKYLETGLKLLTKNSWESQYELTIELYLETLEVLYLNTKFEEVEELSIFILQHTQEIL
DKVKVYQVNILVYNSKSQEQKAIDTALKALAELGIEISQDPSKIKEKIKQEQIFLDRLLK
EVPVQSLANLSPMTDPYKLRAVPLLQQIIASTIITNFLLHIEVVLIQLNLCLKYGNPPQA
PCPYIFYGTFLCKGIENIGLMRDIHLGNEFGELSINLLSESQLPEIETLVIHIYYAFIYQ
WKNYLRNNIALERLIKAFQRGLETGDYQYACFASASFCLIKFFGGYHLEEVSQELTKYTK
LMKKLKQEYSYSSVIIYEKTTINLIEGYENNFCLVIGCNQEEEEECIKTANTWLLCWLCI
AKIITHYIFKEYESAIGNVLKIENYVEYLSSHLNLSQYNFFSSLSLLANYDILDVYSQNK
FLKLVEKNQEDMKNWSSYCPENFQHKYDLVEAEKARVFGQNWQAEELYEKAIQGAKKHEF
IHEEAIAYERAAEFYLSLGREEIGRLYLRNAHHCYSRWGAKAKVKALESEYPQFLMDINK
GKADQSIKTTESSGGTNPQALDLITVTKASQVLASEIKLDQLLAKLMKTVIENGGAQKGF
LLLEKDNKWAIEAEGTLDSDNVNTLQSISVDFVDESTNFPLLSSAIINYVARTQESVILN
DAAHEGQFVRDPYIVATQPKSLLCTPLLNQGKLNGILYLENNLTTGAFTPDRLEVLKLLS
SQAAISLQNAQLYVALYENEKRLAQFLEAMPIGVFALNAKGEPYYANQAAQLILGKGIVT
GATDDRLTETYQAYLAGTDQLYPTQQQPIVRALNGESTTTDDIEIHQVDKTIPLEVSATP
VYDEKGQIIYAIAAFQDITERKQAEADRVQYTQELALKNLALERAKDEIEGYSRTLEQKV
SERTQELSQTLDILKATQAELLFENELLRSTEQASTFDYQVGGSLQMDASTYVVRSADRY
LYKALKRGEFCYVFNPRQMGKSSLMVRMIHYLQHEGVCCAPIDMTRIGSENVTPDQWYKG
LASELGRRLGLRSKVNLKAWWKERDDISPVQRLSEFIEEVLLVEVGIENDIPSKQLVIFI
DEIDSVLSLNFAVNDFFALIRYCYNQRSLNPQYQRLTFAFFGVATPSDLISNIQTTPFNI
GQFIQLEGFKEHEAQPLLQGLAEKVSNPQTVLKEILAWTNGQPFLTQKLCKLIRNTSSPI
PNGGEVSWIENLVRTNIIDNWESQDEPEHLRTIRDRLLKSNKSVQLIEIFRQVLHQGEVI
AVDSPEEKQLLLSGLVVKQQGILRVQNRIYKLIFNRSWVDLHI
Download sequence
Identical sequences K9VBH3
WP_015173939.1.40975 gi|428303525|ref|YP_007113016.1|NC_019727 gi|428303525|ref|YP_007113016.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]