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Domain assignment for gi|433611343|ref|YP_007194804.1|NC_019849 from NCBI plasmid sequences

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|433611343|ref|YP_007194804.1|NC_019849
Domain Number 1 Region: 7-190
Classification Level Classification E-value
Superfamily Methylesterase CheB, C-terminal domain 2.09e-51
Family Methylesterase CheB, C-terminal domain 0.00031
Further Details:      
 
Domain Number 2 Region: 271-449
Classification Level Classification E-value
Superfamily S-adenosyl-L-methionine-dependent methyltransferases 5.56e-46
Family Chemotaxis receptor methyltransferase CheR, C-terminal domain 0.00055
Further Details:      
 
Domain Number 3 Region: 827-955
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 5.53e-21
Family Heme-binding PAS domain 0.024
Further Details:      
 
Domain Number 4 Region: 198-273
Classification Level Classification E-value
Superfamily Chemotaxis receptor methyltransferase CheR, N-terminal domain 9.68e-16
Family Chemotaxis receptor methyltransferase CheR, N-terminal domain 0.0059
Further Details:      
 
Domain Number 5 Region: 734-836
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 0.000000000515
Family Hypoxia-inducible factor Hif2a, C-terminal domain 0.077
Further Details:      
 
Domain Number 6 Region: 1042-1147
Classification Level Classification E-value
Superfamily ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.0000542
Family Histidine kinase 0.06
Further Details:      
 
Weak hits

Sequence:  gi|433611343|ref|YP_007194804.1|NC_019849
Domain Number - Region: 604-725
Classification Level Classification E-value
Superfamily BAR/IMD domain-like 0.000418
Family FCH domain 0.02
Further Details:      
 
Domain Number - Region: 508-608
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 0.0725
Family Flavin-binding PAS domain 0.083
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|433611343|ref|YP_007194804.1|NC_019849
Sequence length 1161
Comment bifunctional PAS domain S-box [Sinorhizobium meliloti GR4 plasmid pRmeGR4d]
Sequence
MDRELDPPIVAIGASAGGVQALQTFFDLMPNDTGATFVVIVHLDPHARSELANILAARTR
MPVTQVEDQARLESNHVYVIAPNRRLKVADGTIAALPFEEPHALRAPIDLFFRSLAEEHG
SEFAVILTGAGADGAIGVKAVKEAGGIVLVQDPEEAEYASMPRNAIDTEVADFVLPIREL
PHRVAELLARRDQLPSHPFRADDDDMIGRILAHVRGRTGHDFSQYKRATILRRIGRRAQI
ARRETFADYYNYLRENPEEAQALFSDFLISVTTFFRDPSAFEALAERVIPQLFDGKEVAD
AIRVWVPGCATGEETYTMGMLLLEEAARRDLSPEIQVFGSDLDEQALRIAREGRYPSTIE
SDLSEERLRRFFQRERDHYRVRRELRDVVLFASHSLLRDPPFSHLDMISCRNLLIYLDRQ
LQQQVCNTFHYALNAGGFLFLGSSESADHPGLFLTVDREARIYRAVAGGGARRPMVLPAL
LGPQKPEMKSTIIRTPAAGHVSDAAVHRQMLEKIAPPSMLVDESHHAIHLSENAGRFLRP
SGGPVSTDATDLVREEFRFDVRAALHRAFERDEPTLSMPILADLDGQPHRVYLQVKPVVQ
GTERTRHALVLFIEGEAIDKTQEVVLDTLDGRPTIDEAIRRLQEELQLAQNRLRLTSEES
ATATEELRAANEELQSMNEEYRSTAEELETSKEELQSINEELQTVNNELKLKLESISRAH
SDLQNLMAATDIATLFLDPSLRIKRFTPRLTEIFNVTPSDEGRPITDFTHYLKYKRLSDD
ARAVLETLRPLEHEVKSRNDGWYLVRMRPYRTVEDKIDGVVVTFVDISERRHAEEAAKES
GRRLEQEMRLVELSRSPIFVWDFDDGIMQWNRGSEELYGYSREEAIGRRKEELLKTAVPG
SSFDRLRRTLSEKGRWSGELNHTTKDGRVLTVESQIELVPFGERRLVLESTRDITDRKRW
ERRGQLLLNELSHRVKNTLAVVQSLARQTLRTTRSSEDFVERFEGRLAALASAHKLLVDS
EWRGAELDALARGQLDAYAGSDRRRLQIEGEPVTLPPDLATPFGLVLHELATNAAKYGAF
STGNGQIRLSWKLGNNGRRLGVIWQERGGPPVEPPSEQGFGGVLIEKSLPGSTVHRDFQP
DGVVCTIDIELPEIRPDGAEN
Download sequence
Identical sequences WP_015243309.1.92524 gi|433611343|ref|YP_007194804.1| gi|433611343|ref|YP_007194804.1|NC_019849

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