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Domain assignment for gi|528831184|ref|YP_008367138.1|NC_021907 from NCBI plasmid sequences

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|528831184|ref|YP_008367138.1|NC_021907
Domain Number 1 Region: 14-202
Classification Level Classification E-value
Superfamily ClpP/crotonase 1.99e-22
Family Clp protease, ClpP subunit 0.045
Further Details:      
 
Domain Number 2 Region: 381-440
Classification Level Classification E-value
Superfamily NfeD domain-like 0.00000000000981
Family NfeD domain-like 0.0056
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|528831184|ref|YP_008367138.1|NC_021907
Sequence length 446
Comment nodulation efficiency protein NfeD [Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1b]
Sequence
MLLFLLLSAWVFGVPSASDRVSVVLKVNGAIGPAIADYVIRGIQRAGEREAVLIVLQMDT
PGGLDTSMREIIRAILASPVPVASFVAPSGARAASAGTYILYASHIAAMAPGTNLGAATP
IALGVKPFGGDEEPEKKPSEPSGKQAEAPGNAHEAKAVNDAVAYIRGLAELRNRNADWAE
RAVREAASLSSTAAVREHVIDFTAVDINDLLAKAQGRMVRVGQTDLRLDTVGLAVQEFEP
DWRTHLLSVITDPNIAIILMMVGIYGLIFEFLAPGTMLPGTIGGICLLLGLYALALLPVS
FAGLGLIFLGVGLTVAEAHSPSFGAFGIGGGIAVILGATILFDTDIPGLEVSRPLLGAIA
VATLAFSLVVARLAFTSRLRQVTTGAEEMIGISGRVESWTGLTGYVIAHGERWKAVSAEP
LVAGDPVRVTGRNGLALEVASRPKNT
Download sequence
Identical sequences S5SR93
gi|528831184|ref|YP_008367138.1|NC_021907 gi|528831184|ref|YP_008367138.1|

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