SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|86360809|ref|YP_472696.1|NC_007766 from NCBI plasmid sequences

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|86360809|ref|YP_472696.1|NC_007766
Domain Number 1 Region: 293-485
Classification Level Classification E-value
Superfamily S-adenosyl-L-methionine-dependent methyltransferases 6.57e-48
Family Chemotaxis receptor methyltransferase CheR, C-terminal domain 0.00028
Further Details:      
 
Domain Number 2 Region: 24-203
Classification Level Classification E-value
Superfamily Methylesterase CheB, C-terminal domain 3.79e-26
Family Methylesterase CheB, C-terminal domain 0.00059
Further Details:      
 
Domain Number 3 Region: 970-1102
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 6.98e-21
Family Heme-binding PAS domain 0.015
Further Details:      
 
Domain Number 4 Region: 846-953
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 2.62e-18
Family Heme-binding PAS domain 0.02
Further Details:      
 
Domain Number 5 Region: 228-295
Classification Level Classification E-value
Superfamily Chemotaxis receptor methyltransferase CheR, N-terminal domain 0.00000000000458
Family Chemotaxis receptor methyltransferase CheR, N-terminal domain 0.0098
Further Details:      
 
Domain Number 6 Region: 728-848
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 0.00000147
Family Heme-binding PAS domain 0.038
Further Details:      
 
Weak hits

Sequence:  gi|86360809|ref|YP_472696.1|NC_007766
Domain Number - Region: 658-746
Classification Level Classification E-value
Superfamily Tropomyosin 0.00126
Family Tropomyosin 0.0041
Further Details:      
 
Domain Number - Region: 1177-1291
Classification Level Classification E-value
Superfamily ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.0223
Family Histidine kinase 0.03
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|86360809|ref|YP_472696.1|NC_007766
Sequence length 1324
Comment chemotaxis methyltransferase [Rhizobium etli CFN 42 plasmid p42f]
Sequence
MMAYDEQESMEQQATAPDPGRYEQPVVIVGIAVCAQSVSSLEQIFSQIDVDLGASYLVAV
RQEGVDATAVLDMLGRQDRLAVTVAVDRERILPNHVYIAGSDDMMTLEDGHIRIRPASEP
IGHRGTIDTMLISLAEHAQERAIAVVLRGLESDGTAGVAATKKFGGLSIVEAGEGTDGST
EEGGGALAIADLRLPAQGIATHIALYAGNVTEEEDAGLDDERPSVLEAQITQIATILRNV
TSHDFHGYKRGTFTRRVQRRMQVLQIASIEAYIERLRASRDEVQNLFQDLLIGVTQFFRD
PAEFEALEREIPRLFEGKEPGDQLRVWVLGCATGEEAYSIAMLLREHMATMDYPPDVQIF
ATDLDARALGIARGGRYSAAITSQVPPERLARWFVREGDTYCVVKELREMCIFSPHNIVK
DAPFSRIDILSCRNLLIYLDSELQNRVIPIFHFALRPSGILFLGSSENVTRHAKLFAPVD
RKNRLFRRLETATRIIPDFPLSPRPRSPDHPLSAPAPMLQTGRLSATISRQAEVVAERFA
PAYVVVDSHYDVLHFSGRTGRYLEPASGTATLNLLSLAHRDLRLDMRSALQRATTEAVKV
EVPRVLLRQDDRTYAVNIIVEPLGSGDVTSLIVLFQDAGQVAEGTAPDGGRLTSEEHVQR
LETDLRVTRDRLQATIEELESTNEELKSSNEEYQSINEELQSANEEMETSKEELQSVNEE
LQTVNGELAHRVTELDRTNSDLKNLLEATQIATVFLDNDLRVRSFTPAATEIFHLLDTDV
GRPLDHVVSRVAYPELLDDVRLVLRTLVPTDRKVSDPTNNRHYAARALPYRSVDNYISGA
VVTFTDLTATYEAEVALRRSEERLQRVLETDAVGVIFLNRDGVIFDANEVFLKMSGYTRS
QMERGELHWRRLTPEEHHAESEAQMEALKETGKIGPYEKEYFLADGTRRWMLFAGRDLGD
GTVAEFCIDISARKQAQAALRQGEEQFRLFGEASSDVLWIRDAETLQWVYLTPAFETIYG
VDREQAMTGNNFRSWAELIIPEDREQALSEIGRVREGERVEFEYRIRRASDHEIRWLRNA
DFPLFGEEGNVKQIGGIGRDITEEKASAERMKVLVAELQHRTRNLMAVVRSMAEKTMRTS
TDLADFHERFRDRLDVLARVQGLLSRLQEGDRITFDQLIRSELAAHGMLEGENSRISLQG
PDGVRLRSTTVQTMALAMHELGTNAVKYGALSQARAHLAITWRVEQSGEGGKPWLHVDWQ
ESGVKMPAADSGLQGGGQGRELIERALPYQLDAKTSYVLGEDGVHCTIAIPVSLSNLIEA
EAYG
Download sequence
Identical sequences Q2JZL7
gi|86360809|ref|YP_472696.1| gi|86360809|ref|YP_472696.1|NC_007766 347834.RHE_PF00076

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]