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Domain assignment for gi|86360952|ref|YP_472839.1|NC_007766 from NCBI plasmid sequences

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|86360952|ref|YP_472839.1|NC_007766
Domain Number 1 Region: 1065-1204
Classification Level Classification E-value
Superfamily ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3.41e-34
Family Histidine kinase 0.0013
Further Details:      
 
Domain Number 2 Region: 830-963
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 5.41e-23
Family Hypoxia-inducible factor Hif2a, C-terminal domain 0.072
Further Details:      
 
Domain Number 3 Region: 697-830
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 5.06e-21
Family Hypoxia-inducible factor Hif2a, C-terminal domain 0.039
Further Details:      
 
Domain Number 4 Region: 564-697
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 8.9e-21
Family Flavin-binding PAS domain 0.048
Further Details:      
 
Domain Number 5 Region: 431-564
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 5.76e-19
Family Flavin-binding PAS domain 0.031
Further Details:      
 
Domain Number 6 Region: 300-431
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 7.15e-19
Family Flavin-binding PAS domain 0.067
Further Details:      
 
Domain Number 7 Region: 986-1058
Classification Level Classification E-value
Superfamily Homodimeric domain of signal transducing histidine kinase 0.000000922
Family Homodimeric domain of signal transducing histidine kinase 0.0077
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|86360952|ref|YP_472839.1|NC_007766
Sequence length 1211
Comment two-component sensor histidine kinase [Rhizobium etli CFN 42 plasmid p42f]
Sequence
MESVWSHRPPILRLALFFLAYVLACGFAQSLAVVPGTGISIWPPAGLFIATLILASRPSW
PWWILAGCLGEMFSNVLWFHSPQAAAFLIYVGNALEAVVAAWLVNRTLKLPVRLETLQEV
TAFVIISAGIAPAVSATIGSATLAWFSIQSQSFLTAWPLWWIGDATGVLIVAPLALVLFH
SWRGKTQLSTGQWVEAAVLALIFLGVAVLSLSGYLPFAYIIMPPLLWAAVRFEFKGAAVS
LALLALIAAVFTITGASQFAGDPESQKHNQVMLQLFLAISAFSALIVAAISRQHQLAVLS
LRQSVDALSERERELSQLVDMVPSHVWRLRPNGEPTFFNKRMIDFLGIDVADSDRPDMSR
LEAVLQAIVHPDDTAAFRESLSHCLVTGENFAMRYRLRRADGVYRWMSSRAEPMRDQAGN
IVQWYGLCHDIDDQVHAEEALRRSEQQLQQMIDAVPVRIWSVEPAGGSIYFNKRYQDHFR
AVIDDFDADGEPRIDELLQQLIHPDEAADVQRTLSNCFESGGGAAMRFRWLEKDGIYRWA
ECRVEPRRDEDGKVVQWYGVSLDIDDEVRALEALRDRERELSQLVDMVPVQIRRLTPTGE
PVFFNKRLIDFFGVDVGDMDRAGMSRLSSVIHTLVHPDDAPRLLETVHRSLASGDPFTIK
YRMRRFDGTYRWVDGRAEPLRDQNGAIVQWYVISVDIDDEMRAQEALRNREHELSQLVDM
VPSLLWRLNPEGAPTFFNKRLIDFLGLDVAETEKPGMSRLAALIDVAVHPDDAESLAEAL
NHSLATGERFSKQYRLRRADGVYRWLKGSAEPLRDESGRIVQWYGLSHDIDDQLRIEEAL
RERERSLWQIVETLPIMIDCAAPDGEPVYRNPQLRDFLGYKLEDLDGTGKSRLAGTLDAG
VHPDDLADVKEKYAHSLATGEPYARRHRLRRFDGDYRWVETRAAPMRDGEGAIVQWNVIC
LDIDGEVRAQEELRLTQEGLARASQAASLAELSASIAHEVNQPLAAVVANSHACQRWLTA
DPPNMERAQRTVERIIRDANSAAEVVGRIRALFKQSADKRVQTTLSNVIDEVRSLIADEA
WRRGVRIDVDVDDSLPSIALDRIQIQQVLINLIRNGIEALDATTSDRVVEIRSHLVGNAV
QTEIRDRGRGIEFPEKMFEPFFSTKESGMGMGLAICRSIVELHGGRLWAEKNQPHGATLI
FSLPVETKAAS
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Identical sequences Q2JZ74
347834.RHE_PF00222 gi|86360952|ref|YP_472839.1|NC_007766 WP_011428529.1.62937 gi|86360952|ref|YP_472839.1|

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