SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|384533923|ref|YP_005716587.1|NC_017323 from NCBI plasmid sequences

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|384533923|ref|YP_005716587.1|NC_017323
Domain Number 1 Region: 53-358
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like I 2.69e-26
Family L-arabinose binding protein-like 0.0073
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|384533923|ref|YP_005716587.1|NC_017323
Sequence length 395
Comment ABC transporter substrate-binding protein [Sinorhizobium meliloti BL225C plasmid pSINMEB02]
Sequence
MPNLKLLLAVFWATVLLTSPLPAAEVKTAVLRIDRVVGPPISRLDAPPADLGFAGAMLGN
EDNRTTGAFTGMDYTVKTQAVAPEEAVAALDGLKAEGIGLIAVIAEGDILKALSDKAGPE
VLLFNAGARDDGLRDADCRANVLHVSPSRSMLSDSIVQFLMWKKWQRILLIHGSHPEDKL
LADSYRKSAAKFGAEIVEEREFVDTGGSRRTDTGHVMVQKQIPVFTQEAEEYDVIVAADE
AGVFAPYLPYHSWDPRPVAGSAGLRPVSWHPAHEAWGATQFQRRFEKLTGRYMREEDYQA
WLAMRVIGEAVTRSGKADPATVRAYALSKDFELAAFKGQKLTFRTWNGQLRQPVLLTEGR
VTVSVSPQDGYLHQHSPLDTLGIDAPETACHAFGG
Download sequence
Identical sequences A0A0E0UQ48 Q92WY4
gi|470185550|ref|YP_007612922.1| NP_436718.1.96377 WP_010975089.1.18618 WP_010975089.1.22199 WP_010975089.1.24285 WP_010975089.1.30341 WP_010975089.1.3038 WP_010975089.1.34728 WP_010975089.1.4234 WP_010975089.1.49828 WP_010975089.1.50755 WP_010975089.1.58221 WP_010975089.1.63001 WP_010975089.1.787 WP_010975089.1.79107 WP_010975089.1.83536 WP_010975089.1.90561 WP_010975089.1.94084 WP_010975089.1.96031 WP_010975089.1.99158 gi|16263926|ref|NP_436718.1| gi|16263926|ref|NP_436718.1|NC_003078 gi|384533923|ref|YP_005716587.1|NC_017323 gi|407724099|ref|YP_006843760.1|NC_018701 gi|470185550|ref|YP_007612922.1|NC_020560 gi|407724099|ref|YP_006843760.1| gi|384533923|ref|YP_005716587.1| 266834.SM_b20178

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]