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Domain assignment for gi|470186808|ref|YP_007614180.1|NC_020560 from NCBI plasmid sequences

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|470186808|ref|YP_007614180.1|NC_020560
Domain Number 1 Region: 66-337
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like I 3.73e-70
Family L-arabinose binding protein-like 0.0000344
Further Details:      
 
Domain Number 2 Region: 6-65
Classification Level Classification E-value
Superfamily lambda repressor-like DNA-binding domains 0.00000000000000534
Family GalR/LacI-like bacterial regulator 0.0035
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|470186808|ref|YP_007614180.1|NC_020560
Sequence length 341
Comment Putative transcriptional regulator,LacI family protein [Sinorhizobium meliloti 2011 plasmid pSymB]
Sequence
MSDSTPATIEDVARIAEVSIATVSRAIHNPEKVAKSTRLKVNQAIAITGYTTNAMARSLR
LGRSNMILVVAPDIGDPNFSSILVGLENEARSHGYGVLIGHTQNDAQRAVEYLKFLNSNQ
AAGLILFTGILPFGHETIAARLPPSVGIFEPVFNGGIPYVGVDDVEGARKVVDLLIAEGH
RKIAFIGDSRTRLAYKRRRSGYDAGLDAAGVPAELRLVQEGDGTLESGRAAVERLFVRDT
LPTAFMCVNDQTALGVMIGLKARGYDIPRDFSVTGFDDVPQATFMTPALTTIRQPRTLIG
KHAMALLLELLSDRRPAETEIFLRPDLVVRNSVSAPSPRWA
Download sequence
Identical sequences A0A0E0UR20 A0A222J0H0 Q92TS4
gi|470186808|ref|YP_007614180.1| NP_437964.1.96377 WP_010976232.1.18618 WP_010976232.1.22199 WP_010976232.1.24285 WP_010976232.1.30341 WP_010976232.1.3038 WP_010976232.1.3110 WP_010976232.1.34728 WP_010976232.1.36091 WP_010976232.1.36834 WP_010976232.1.4234 WP_010976232.1.50755 WP_010976232.1.55094 WP_010976232.1.58221 WP_010976232.1.58608 WP_010976232.1.63001 WP_010976232.1.65778 WP_010976232.1.66997 WP_010976232.1.72343 WP_010976232.1.73540 WP_010976232.1.78492 WP_010976232.1.787 WP_010976232.1.83096 WP_010976232.1.83536 WP_010976232.1.86220 WP_010976232.1.89614 WP_010976232.1.90561 WP_010976232.1.92524 WP_010976232.1.94084 WP_010976232.1.96031 WP_010976232.1.99158 gi|407722895|ref|YP_006842556.1| gi|16265172|ref|NP_437964.1| gi|384534233|ref|YP_005716897.1| gi|433610455|ref|YP_007193916.1| gi|16265172|ref|NP_437964.1|NC_003078 gi|384534233|ref|YP_005716897.1|NC_017323 gi|407722895|ref|YP_006842556.1|NC_018701 gi|433610455|ref|YP_007193916.1|NC_019849 gi|470186808|ref|YP_007614180.1|NC_020560 266834.SM_b20717

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