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Domain assignment for gi|15603819|ref|NP_246893.1| from Pasteurella multocida subsp. multocida str. Pm70

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|15603819|ref|NP_246893.1|
Domain Number 1 Region: 229-650
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 1.77e-144
Family RNB domain-like 0.00000962
Further Details:      
 
Domain Number 2 Region: 652-732
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 1.07e-21
Family Cold shock DNA-binding domain-like 0.002
Further Details:      
 
Domain Number 3 Region: 75-154
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 5.32e-18
Family Cold shock DNA-binding domain-like 0.0063
Further Details:      
 
Domain Number 4 Region: 148-245
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.00000000000000857
Family Cold shock DNA-binding domain-like 0.016
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|15603819|ref|NP_246893.1|
Sequence length 800
Comment hypothetical protein PM1954 [Pasteurella multocida subsp. multocida str. Pm70]
Sequence
MAKIKNNPHLQDPNYQEELAKYENPIPSREFILDTIRQHNAPISKEELLTTFAIQNEEQQ
EAMRRRLRAMENDGQLVFTKRKRYALPEKLDLLKGTVLGHRDGYGFLQVEGKDSDWFIPN
SQMQRVMHGDYVLAQPSGFDRRGRQEVRIVRVLQQRKKQIVGRFFLEDGIGYVVPDDSRI
NRDILIPNEHRQGARMGQVVVVELKPRTATFSQPVGMISEILGENMAKGMEVEIAIRNHD
IPHVFPDAVLKQVSKLSEEVPEEAKSGRIDLRHLPLVTIDGEDARDFDDAVFCQKKRGGG
WKLWVAIADVSYYVRLRTALDTEAHARGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLC
MVCELNVSAKGKITGYEFYEAVMNSHARLTYTKVARILEDDEELCTRYQALVPHLKELHV
MYQALVEARHQRGAIDFETIESKFVFNEMGRIERIEPVIRNDAHKIIEECMILANIAAAN
FMEKHQEPALFRIHAGPSEEKVTGFRQFLSECGLSLEGGSKPSTADYAKLLEQIRERPDH
ELLQTMLLRSLSQAVYHPDNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKLKGS
KRRTTDTGGYHYTLDDMDVLGDHCSMTERRADDATRDVADWLKCEYMQDHVGEEFTGVIS
SVTGFGLFVRLDDLFIDGLVHISTLDNDYYQFDLARQRLIGENSGMIYRIGDKVKIRVEA
VSLEQRQVDFSLVSSERKPLREGKTAKDKLKKNARYAESLEKQRHKRKPSTSKSAVRKTS
VVKPSTTTKKASKKSAKKRK
Download sequence
Identical sequences Q9CJP2
gi|15603819|ref|NP_246893.1| 272843.PM1954 WP_010907422.1.12311 WP_010907422.1.15732 WP_010907422.1.17980 WP_010907422.1.19996 WP_010907422.1.27416 WP_010907422.1.40210 WP_010907422.1.45422 WP_010907422.1.4808 WP_010907422.1.53852 WP_010907422.1.6219 WP_010907422.1.62389 WP_010907422.1.66990 WP_010907422.1.75804 WP_010907422.1.81885 WP_010907422.1.8281 WP_010907422.1.89773 WP_010907422.1.9746 WP_010907422.1.9947

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