SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|77458585|ref|YP_348090.1| from Pseudomonas fluorescens Pf0-1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|77458585|ref|YP_348090.1|
Domain Number 1 Region: 112-319
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like II 1.47e-39
Family Phosphate binding protein-like 0.018
Further Details:      
 
Domain Number 2 Region: 19-134
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 4.99e-17
Family LysR-like transcriptional regulators 0.023
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|77458585|ref|YP_348090.1|
Sequence length 321
Comment LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1]
Sequence
MVSFAKCVINSGSMRPMNTNRDQFPLPEDLKVFLTVIRKNSFASAADELGFSPAYVSKRI
SVLETTLASKLLHRTTRRIALTDDGERVRIWAEKLLGDFDQFLGEISQARHQPAGSLHIC
SSFGFGRNHVAPAISQLSRACPKLDIRLDVFDRVVDLVGEGFDLEILVGDDLPGQHLARK
LVSNRRVLCATPEYLERRGTPQSLEDLKDHDCLVLKERNNAFGIWTLSKDGQEETVRVNG
PLSSNSGEIVLEWALSGGGILLRSMWDVKPMLEQGRLVQVLDGYTQSANVWAVYPTRLSE
SAKLRVCVEFLEEYFRDLSVE
Download sequence
Identical sequences Q3KDQ5
205922.Pfl01_2358 gi|77458585|ref|YP_348090.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]