SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|77460541|ref|YP_350048.1| from Pseudomonas fluorescens Pf0-1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|77460541|ref|YP_350048.1|
Domain Number 1 Region: 90-296
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like II 2.9e-46
Family Phosphate binding protein-like 0.013
Further Details:      
 
Domain Number 2 Region: 4-85
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 9.4e-20
Family LysR-like transcriptional regulators 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|77460541|ref|YP_350048.1|
Sequence length 298
Comment LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1]
Sequence
MNKLELLRTFVRVSELSSFTMAGESLGLPRSTVSEQVQALENLLGTRLLQRTTRKVQPTQ
DGLALYERSKDLLSHMDEIENLFRQDEASLTGRIRIDMPNILARRLIMPKLPEFMARHPN
LELEISSTDRRVDLLAEGFDCVVRIGAQPDQSVVARHLGDFSMINCASPAYLERYGVPQT
LEDLAQHRLVHYVGVLGSRSEGFVYEQDGQVHRVPMPGSVTVNSTDAYESACLGGFGLIQ
VPRTGMNTYLDSGEIVTVLPQYTAPAMGISLLYARQRHLPLRVRVFMDWLGELIRSTL
Download sequence
Identical sequences Q3K847
WP_011335567.1.2668 gi|77460541|ref|YP_350048.1| 205922.Pfl01_4320

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]