SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for POPTR_0004s03530.1|PACid:18225369 from Populus trichocarpa v156

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  POPTR_0004s03530.1|PACid:18225369
Domain Number 1 Region: 360-462
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 2.62e-19
Family B3 DNA binding domain 0.0012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) POPTR_0004s03530.1|PACid:18225369
Sequence length 918
Sequence
MSSSPPHLPTSTTATTANNNNTSCSSSSTALSRKCFNSDCTDFKSRKGWRLRSGDFAELC
DRCASAYEEGSFCETFHLRASGWRCCESCGKGVHCGCIVSIQTFTLLDAGGIACMACERK
SFVLESNPQILLTATSADVTSNPAWSPLFYHAPFPERLKDLSVKSWSQLAGSGPVPWRQA
PSLFNPSAAQSELQTRMPYEVDRLNTGERFSAPSLEKRKVEDFSEKFINGNLRIRLQDIV
ENGNAGIIGEEQPQPSSSLMEDASGQQFGITIPYKSISESNSQIEGSVNALQPAPPPPFT
KHFHGSLHNGVDSSVDGHIRNGKPRTDARGRSQLLPRYWPRFTDGELQQISGNSNSVIKP
LFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLRVQDSKGKEWIFQFRFWPNNN
SRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKATSAPPSDQDNETSQTGNG
VSTKGDAELDPSPWSKVDKSGYIAKEVLEGKSSIRKRKSSTLGSKSKRLRIENEDMIELK
LTWEEAQGLLRPPPDHVPSIVAIEGFEFEEYEDAPVLGKPTIFATDNVGQKIQWVQCEDC
LKWRKLPANALLPSKWACSSNTWDPERSSCSVAQELTAEQLEDLLPSCNLVVTSKRSKDA
KKDIDRVEALEGLDTLANLAILGEGEAFPASSQATTKHPRHRPGCSCIVCIQPPSGKGPK
HKQTCTCNVCQTVKRRFKTLMMKREKKQSEKEAETKQSEKEAETTRKRQQEPSAEKLLDD
EPSPSSNTGSESGSPNKKKTVSEGSDDDPSRMKSSTSPFKGQIDLNIQPEREDELSPGSD
SGGMMRMLQDATETYLRMQRFLSSDGDNNPSGNHMLSSGGTREKVSDVIMLGSSHQDADK
DHPSAFSMNASASTPATG
Download sequence
Identical sequences B9H228
POPTR_0004s03530.1|PACid:18225369 3694.eugene3.00040219 XP_002305001.1.11743

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]