SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for POPTR_0004s08110.1|PACid:18226893 from Populus trichocarpa v156

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  POPTR_0004s08110.1|PACid:18226893
Domain Number 1 Region: 276-680
Classification Level Classification E-value
Superfamily Formate dehydrogenase/DMSO reductase, domains 1-3 3.38e-88
Family Formate dehydrogenase/DMSO reductase, domains 1-3 0.00032
Further Details:      
 
Domain Number 2 Region: 138-274
Classification Level Classification E-value
Superfamily 4Fe-4S ferredoxins 3.31e-37
Family Ferredoxin domains from multidomain proteins 0.0002
Further Details:      
 
Domain Number 3 Region: 65-137
Classification Level Classification E-value
Superfamily 2Fe-2S ferredoxin-like 5.13e-20
Family 2Fe-2S ferredoxin domains from multidomain proteins 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) POPTR_0004s08110.1|PACid:18226893
Sequence length 736
Sequence
MGLGLLASRLIRPQKTAARNLLLRSIVTKPELQSAEPATTPQPDLPPRTPLGGARVHFPN
PDDAIEVFVDGYPVKIPKGMTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPK
PVASCAMPALPGMKIKTDTPVAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFG
SDRGRFTEVKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEIAGVQDLGMLGRGSGEEIG
TYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDITDAVGSNIRIDSRG
PEVLRITPRLNEDINEEWISDKTRFCYDGLKRQRLNDPMIRGADGRFKAVSWHDVLAVVA
EIAHQVKPEEMVGIAGKLSDAESMMALKDFLNKMGSNNVWCEGNGPSPNADLRSGYIMNS
GISGLENADVFLLVGTQPRVEAAMVNARIRKTVRGSNAKVAYVGPPTDFNYDCEHLGTGP
ETLTEIAEGRHPFCSTLSNAKNPAIIVGAGLFERSDKDAIFSAVEAIAKNGNVVRPDWNG
FNVLLLNAAQAAALDLGLVPESSQSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDR
GVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTAGDARDDWKIIRALSEVAGVRLP
YDTVGAIRSRIKTVAPNLLSVEEREPATFWASLKPDVTKKMSSTPFEAAIDNFYMTDSIT
RASKIMAQCSALLLKK
Download sequence
Identical sequences B9H3E2
POPTR_0004s08110.1|PACid:18226893 XP_002305231.1.11743

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]