SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for jgi|Phypa1_1|101899|fgenesh1_pg.scaffold_507000001 from Physcomitrella patens

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  jgi|Phypa1_1|101899|fgenesh1_pg.scaffold_507000001
Domain Number - Region: 46-86
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00628
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) jgi|Phypa1_1|101899|fgenesh1_pg.scaffold_507000001
Sequence length 327
Sequence
MPTVQPSTSLSKKADMGMKEIIRGMRDLQIKLARLEENTSINNLKNVSKQGYVQRCIWCD
DASHTRKDCNEFNNMIRHGIICWKDGKIALKDREDLLQTNFGKGRMRALVQDYLKEHETV
VRESASYGARVDDEIGGSTETSEFWASVVSTMQEGKLPREALLRIAATIRGRTGWEDPVE
SLLVHAYIAKSQHEALMEEKRRGNFDDTREGNSFNRQTQGDKAREATSQELPEHQPTPVQ
ILSGQVQALRYSQSGHTEMLRSIPITGVSRKRKTNSHDGFEEPIGSNFDNPIRILLSNMR
PELARRLNVTQLREHPGYYGHLSQYRT
Download sequence
Identical sequences A9U4C6
XP_001785713.1.60028 3218.JGI101899 jgi|Phypa1_1|101899|fgenesh1_pg.scaffold_507000001

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]