SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for jgi|Phypa1_1|75465|fgenesh1_pg.scaffold_53000069 from Physcomitrella patens

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  jgi|Phypa1_1|75465|fgenesh1_pg.scaffold_53000069
Domain Number - Region: 53-78
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0471
Family Retrovirus zinc finger-like domains 0.0078
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) jgi|Phypa1_1|75465|fgenesh1_pg.scaffold_53000069
Sequence length 478
Sequence
MPTVQPSTSLSKKADMDMEEIIRRMRDLQIKLARLEENTSINNSKNVSKQGYVQRCIWCD
DASHTRKDCNKFNNMIWQGIIYWKDGKIALKDRADLLQTNFGKEGMRALVQDYLKEHETA
TRESASYGARVDDEIGGSTETSEFWASTVSTMQEGKLPREALLRTAATIRAATNLKRVLE
ECILNAKVEFTLKEVLGIAKKEFHDVIIDSIKRKRQLMGETGMSHAIDARICRDEEEVDI
GYKQPTNEKNGYNQRVRFEDSSDKEMETLSHYTRKHWARATTEVLVKVGVIEEPIVALVD
HANNTRGELYGACPDVKIQIEDVATEQHFFVQDTTSYPLILGQPYITATRMETKVLDDGS
AYARRDYGGTKEEVLSRDEGAFDASFICILENRNIMYKKVDDFKRKERKRLYDIEGQLRK
LGTLQDDERILGVYEENRLEDSLELITSIGLGDNDKIVEIHSREVYTILESFQAPEVT
Download sequence
Identical sequences A9S765
3218.JGI75465 jgi|Phypa1_1|75465|fgenesh1_pg.scaffold_53000069 XP_001762224.1.60028

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]