SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|407464854|ref|YP_006775736.1| from Candidatus Nitrosopumilus sp. AR2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|407464854|ref|YP_006775736.1|
Domain Number 1 Region: 7-146
Classification Level Classification E-value
Superfamily N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 1.31e-43
Family N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 0.0000693
Further Details:      
 
Domain Number 2 Region: 148-277
Classification Level Classification E-value
Superfamily Translational machinery components 1.83e-35
Family ERF1/Dom34 middle domain-like 0.00067
Further Details:      
 
Domain Number 3 Region: 279-423
Classification Level Classification E-value
Superfamily L30e-like 2.19e-26
Family ERF1/Dom34 C-terminal domain-like 0.004
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|407464854|ref|YP_006775736.1|
Sequence length 426
Comment peptide chain release factor 1 [Candidatus Nitrosopumilus sp. AR2]
Sequence
MPKIDVEKQDSVKIYKIRKTLEELSKKSGRGTELITVYIPKGKQLHEIISSLQQEQGTAD
NIKSDLTRSHVVDSLGKVIQRLKLYKKTPPKGLVMFCGALPPDEGGPLGSEVVKVWEIDP
PKDLNQYLYRCDDHFHVDILKDMLKDDNLIGFLAIDAKDAGWGLLHGDKIEVLSQTGSGV
AGKHRQGGQSAKRFQKLREMELSYFYNRVAQTTREYFIDIYPVKGLIISGPGPTKEDFIN
GNYLEYRLQNNIISTIDSSYSGAEGIREAFAKSSDILGNFRMVEEKKMVEDLFREINSNT
GKGSYGLQEVIEYLKNNVVQTLLITDNTNLHRVEGKCKRCKHTQEEIVERPLVIPKKTEF
ANNPCPGCKSMEVEVNEQDIVDYLEILASKTGTQLEVISGSAEHGNMLSSLGKVGAILRY
NPGHAK
Download sequence
Identical sequences K0BBB5
WP_014965165.1.40567 WP_014965165.1.82955 gi|407464854|ref|YP_006775736.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]