SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|344999051|ref|YP_004801905.1| from Streptomyces sp. SirexAA-E

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|344999051|ref|YP_004801905.1|
Domain Number 1 Region: 66-268
Classification Level Classification E-value
Superfamily Rhomboid-like 1.19e-37
Family Rhomboid-like 0.0012
Further Details:      
 
Weak hits

Sequence:  gi|344999051|ref|YP_004801905.1|
Domain Number - Region: 6-51
Classification Level Classification E-value
Superfamily B-box zinc-binding domain 0.000229
Family B-box zinc-binding domain 0.0083
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|344999051|ref|YP_004801905.1|
Sequence length 304
Comment Rhomboid family protein [Streptomyces sp. SirexAA-E]
Sequence
MEAAATTCYRHPSYETYVRCTRCDRYICPDCMREAAVGHHCVECVKEGRSSVRQARSLFG
GAVPRAAAPVVTYALMALNILAYVVEVVRSETVDRFGMLGAVLVDPAGGQYYYEGGTYPG
YELTGVADGEWYRLLTGAFLHLPPDTSFGVMHLVFNMFALWNLGRVVEGQLGRARYLALY
LLSAVGGSVLVYLVSPETTAVGASGAVFGLAASFYVINRRLGRDMQAVNRFMAGFLLWMV
ISAAFTSWEGHLGGLLTGGLVTYGLAYAPARLRTSAMQLAGGVVLVALLGVVVAVRTAAL
TGAA
Download sequence
Identical sequences G2NAW4
gi|344999051|ref|YP_004801905.1| WP_014045352.1.27930 WP_014045352.1.39937 WP_014045352.1.47793 WP_014045352.1.77718 WP_014045352.1.79727

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]