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Domain assignment for ENSRNOP00000018169 from Rattus norvegicus 76_5.0

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000018169
Domain Number 1 Region: 3-138
Classification Level Classification E-value
Superfamily Eukaryotic RPB5 N-terminal domain 8.76e-46
Family Eukaryotic RPB5 N-terminal domain 0.00023
Further Details:      
 
Domain Number 2 Region: 135-209
Classification Level Classification E-value
Superfamily RPB5-like RNA polymerase subunit 3.4e-30
Family RPB5 0.0000834
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000018169   Gene: ENSRNOG00000013545   Transcript: ENSRNOT00000018169
Sequence length 210
Comment pep:known chromosome:Rnor_5.0:7:12702978:12706900:1 gene:ENSRNOG00000013545 transcript:ENSRNOT00000018169 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV
LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD
MAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVA
RYFGIKRGQVVKIIRPSETAGRYITYRLVQ
Download sequence
Identical sequences B0BNE2 Q3V214 Q80UW8
ENSMUSP00000004786 NP_001103084.1.100692 NP_001103084.1.4139 NP_079830.2.92730 XP_004654929.1.11716 XP_005359142.1.66349 XP_006978272.1.50099 XP_007614962.1.28591 XP_007641373.1.69978 XP_008835404.1.79516 XP_008835405.1.79516 XP_021060980.1.100879 GO.52388 ENSMUSP00000004786 ENSRNOP00000018169 ENSRNOP00000018169 ENSMUSP00000004786 10090.ENSMUSP00000004786 10116.ENSRNOP00000018169

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