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Domain assignment for ENSRNOP00000027425 from Rattus norvegicus 76_5.0

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000027425
Domain Number 1 Region: 85-185
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 1.05e-19
Family Canonical RBD 0.0000621
Further Details:      
 
Domain Number 2 Region: 196-288
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 4.7e-18
Family Canonical RBD 0.00037
Further Details:      
 
Domain Number 3 Region: 359-488
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 3.94e-17
Family Canonical RBD 0.0055
Further Details:      
 
Weak hits

Sequence:  ENSRNOP00000027425
Domain Number - Region: 524-603
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 0.000114
Family Canonical RBD 0.011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000027425   Gene: ENSRNOG00000020235   Transcript: ENSRNOT00000027425
Sequence length 623
Comment pep:known chromosome:Rnor_5.0:1:88176711:88187394:1 gene:ENSRNOG00000020235 transcript:ENSRNOT00000027425 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MSRRLLPRAEKRRRRLEQRQQPDEQLRRAGAMVKMAAAGGGGGGGRYYGGGNEGGRAPKR
LKTENAGDQHGGGGGGGSGAAGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQ
EFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPG
DSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQS
AQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKR
QRQPPLLGDHPAEYGEGRGFPSVDSRGSCAPARRPPRKFSPVLPLFPSHPPGGPHGGYHS
HYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPDYGPHADSPVLMV
YGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFG
QKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFF
NAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQ
MKNPNGPYPYTLKLCFSTAQHAS
Download sequence
Identical sequences F1LQ48
NP_001128232.1.100692 NP_001128232.1.4139 XP_005371318.1.66349 XP_006539619.1.92730 XP_021052609.1.100879 XP_021499648.1.76796 ENSRNOP00000027425 10116.ENSRNOP00000053867 ENSRNOP00000053867

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