SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSRNOP00000007276 from Rattus norvegicus 69_3.4

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSRNOP00000007276
Domain Number 1 Region: 100-124
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.000000301
Family CCCH zinc finger 0.0045
Further Details:      
 
Weak hits

Sequence:  ENSRNOP00000007276
Domain Number - Region: 127-180
Classification Level Classification E-value
Superfamily BRCA2 tower domain 0.0412
Family BRCA2 tower domain 0.0083
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000007276   Gene: ENSRNOG00000005256   Transcript: ENSRNOT00000007276
Sequence length 426
Comment pep:known chromosome:RGSC3.4:3:66821085:66840708:1 gene:ENSRNOG00000005256 transcript:ENSRNOT00000007276 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQV
AQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCK
FSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVC
RHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLKKDKKKEEKEDEISLEDLIERER
SALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFEFRPE
LVNDDDEEADDTRYIQGTGGDEVDDSVGVNDIDLSLYVPRDVEETGITVASLERFSTYAS
DKDENKLSEASGGLAENGERSDLDEDSGGGGQENGSIDAVPVDENLFTGEDLDELEEELN
TLDLEE
Download sequence
Identical sequences Q6U6G5
ENSRNOP00000007276 10116.ENSRNOP00000007276 NP_001010963.1.100692 NP_001010963.1.4139 ENSRNOP00000007276

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]