SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for ENSRNOP00000013553 from Rattus norvegicus 69_3.4

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSRNOP00000013553
Domain Number 1 Region: 103-213
Classification Level Classification E-value
Superfamily PDZ domain-like 5.78e-26
Family PDZ domain 0.0034
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000013553   Gene: ENSRNOG00000010092   Transcript: ENSRNOT00000013553
Sequence length 326
Comment pep:known chromosome:RGSC3.4:X:26865047:26871906:1 gene:ENSRNOG00000010092 transcript:ENSRNOT00000013553 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MDSHAGNTADPRGSRRGVGLQGSGSPRARQLLERLDARPLAARAAADLSALVRKAGATLR
LRHKEAISGLDSADIEVADSRLPHATLVEHRPQHQRSDTQGPRMEPLPVIQNKASYASRL
PQATGRFSVELVRGPAGFGLTLSGGRNVSGNVPLAVCGLLKDGPAQRCGHLQAGDLVLYI
NGQSTRGLTHAQAVEWIRTGGPRLCLVLQRPQEMNGSRSKEVGGGHQKTDRIPDPRGGRM
MESRGTISPVHHRPKTRTGPGPSPESVATGHVVRAAEHPAEDLEDRIPGSPGPWLVPSED
RLSRALGIRGGGVQLAQEMAAGRRRH
Download sequence
Identical sequences Q6AYQ0
NP_001014131.1.100692 NP_001014131.1.4139 ENSRNOP00000013553 10116.ENSRNOP00000013553 ENSRNOP00000013553

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]