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Domain assignment for ENSRNOP00000022387 from Rattus norvegicus 69_3.4

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000022387
Domain Number 1 Region: 468-532
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 2.22e-18
Family LIM domain 0.02
Further Details:      
 
Domain Number 2 Region: 409-471
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 2.48e-16
Family LIM domain 0.0018
Further Details:      
 
Domain Number 3 Region: 2-52
Classification Level Classification E-value
Superfamily PDZ domain-like 0.0000000000213
Family PDZ domain 0.00041
Further Details:      
 
Domain Number 4 Region: 376-407
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.00000025
Family LIM domain 0.001
Further Details:      
 
Weak hits

Sequence:  ENSRNOP00000022387
Domain Number - Region: 527-555
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.00148
Family LIM domain 0.025
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000022387   Gene: ENSRNOG00000016419   Transcript: ENSRNOT00000022387
Sequence length 559
Comment pep:known chromosome:RGSC3.4:2:240177303:240296914:-1 gene:ENSRNOG00000016419 transcript:ENSRNOT00000022387 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
LKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKSEP
VAVQKGEPKEVVKPVPITSPAVSKVTSTTNMAYNKVPRPFGSVSSPKVTSIPSPSSAFTP
AHAATSSHASPPPVAAVTPPPLSASGLHASANPSAAQCSSPPNTGKPAVHVPRQPTVTSV
CSESAQELAEGQRRGSQGDIKQQNGPPRKHIVERNTEFYHIPTHSDASKKRLIEDTEDWR
PRTGTTQSRSFRILAQITGTEHLKESENDNAKKANSTPEPSQQSASPLSAAESLESPGSN
RPVVAGLRSAAAFKPVGSTSVKSPSWQRPNQAAPSTGRISNSASSSGTGAPMKPAVGPPQ
PSDQDTLVQRAEHIPAGKRTPMCAHCNQAIRGPFLVALGKSWHPEEFNCAHCKNTMAYIG
FVEEKGALYCELCYEKFFAPECGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVF
HLEDGEPYCETDYYALFGTICRGCEFPIEAGDMFLEALGSTWHDTCFVCSVCCESLEGQT
FFSKKDKPLCKKHAHSVNF
Download sequence
Identical sequences ENSRNOP00000022387

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