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Domain assignment for ENSRNOP00000024404 from Rattus norvegicus 69_3.4

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSRNOP00000024404
Domain Number 1 Region: 24-126,309-612
Classification Level Classification E-value
Superfamily Integrin alpha N-terminal domain 7.06e-57
Family Integrin alpha N-terminal domain 0.0000634
Further Details:      
 
Domain Number 2 Region: 108-331
Classification Level Classification E-value
Superfamily vWA-like 1.75e-39
Family Integrin A (or I) domain 0.000000519
Further Details:      
 
Domain Number 3 Region: 771-908
Classification Level Classification E-value
Superfamily Integrin domains 6.28e-27
Family Integrin domains 0.0033
Further Details:      
 
Domain Number 4 Region: 612-770
Classification Level Classification E-value
Superfamily Integrin domains 5.02e-21
Family Integrin domains 0.01
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSRNOP00000024404   Gene: ENSRNOG00000017980   Transcript: ENSRNOT00000024404
Sequence length 1162
Comment pep:known chromosome:RGSC3.4:1:186561795:186598905:1 gene:ENSRNOG00000017980 transcript:ENSRNOT00000024404 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MSFRIPGPRLLLLGLQLFVNAWSYNLDTRHAQSFLTQAGRHFGYQVLQFGDGVVVGAPGE
GNSTGSLYHCHPSSGSCQPVHLAGSNHTSKYLGMTMVTDAAKGSLLACDPGLSRTCDQNP
YLSGLCYLFSQSLGKPILQNRPAYQECMKGNVDLVFLFDGSQSLDKKDFEKIVDFMKDVM
RKLSNTSYQFAAVQFSTECKTEFTFLDYIKLNKNPDVLLGNVTPMFLLTNTFRAINYVVT
HVFKEESGARPDATKVLVIITDGEASDNGNIDAAQDITRYIIGIGKHFSTTQKQEKLHIF
ASKPVEEFVKILDTFEKLKDLFTDLQRKIYAIEGTSKQDLASFNMELSSSGISADLSKGH
AVVGAVGAKDWAGGFLDLHEDLEGATFVGQEPLTSDERGGYLGYTVAWLTSRSSRPLLAA
GAPRYQHVGQVLLFQAPEAGGHWNQTQKIEGTQIGSYFGGELCSVDLHQDGETDLLLIGA
PLFYGEQRGGRVSVYQRRRSLFEMVSELQGDPGYPLGRFGAAISALTDINGDGLTDVAVG
APLEEQGAVYIFNGKPGGFSSQSSQRIPGTQVSPGVRWFGRSIHGVKDLGGDRLADVVVG
AEGQVIVLSSRPVVDIVTELSFSPDEIPVHEVECSYSASQEQKEGVKLKVCFQIRPLTSQ
FQGRLLANLSYTLQLDGHRTRSRGLFPGGSRELGGNTSVTPDKSCMDFHFHFPICIQDLI
SPINVSLNFSLLEEEGSPRDQKGGRDMQPILRPSIHAVTKEIPFEKNCGEDKKCEADLAL
SPPARSGVLRLMSSASLAVEWTLRNLGEDAYWVRLDLDFPRGLSFRKVEMLQPHSQIPVS
CEELTEESSLLTKTLKCNVSSPIFKAGKQMTLQVMFNTLLNSSWGDFVELNGTVHCENEN
SSLGKDNSATTRIPVLYPVNILTEDQENSTLYISFTPKGPKTQQVQHIYKVRIQPSAYDH
NMPALEALVEVPQPHSEGPIAHTWTVHTDPLVTCHREDLKKPTREAEQPCLPGVQFRCPI
VFRQETFIRVAGTVELSEKIKASSTLSLCSSLSVSFNSSKHFHLYGSKASKAQVLMKVDM
IYEKEMLHLYVLSGIGGLLLLSLIFLALYKVGFFKRKLKEKMEADGGVPNGSPGEDADPL
AVPGEETKDMGCLEPLRESDKD
Download sequence
Identical sequences ENSRNOP00000024404 10116.ENSRNOP00000024404

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