SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|81299780|ref|YP_399988.1| from Synechococcus elongatus PCC 7942

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|81299780|ref|YP_399988.1|
Domain Number 1 Region: 43-82
Classification Level Classification E-value
Superfamily Rho N-terminal domain-like 0.000000667
Family Rho termination factor, N-terminal domain 0.044
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|81299780|ref|YP_399988.1|
Sequence length 452
Comment hypothetical protein Synpcc7942_0971 [Synechococcus elongatus PCC 7942]
Sequence
MVPNGLLQSESLGWTGISLDPQPKLRQGRSVASPMLMSKSPYPLEQMTLRQLRRVASEYG
VSRYSRMRKSELIAAIQKIEANSAVHTSPSPSSDRQEEVEATKYDVGQPQPVEPIELTGV
DAELPDLPEGYGESRIVLLPRDPQWAYVYWDVPGDHKQALKSQGGQLLALRFYDVTDLDL
NYQSPHSLQEYPCDELARDWYLPVPVSDRDYLVEIGYRAADGRWLLLARSAPVRVPPVYP
SDWIEDHFITVNWDEDLRGQTVFQLVPPSQKASLASSGGAAPGPGTVSDEIFALSEGAES
MRLAGSLYGSQHMRPVHEETLSSYVFPSGVGMWALPTASGLTQSGVGMVGFSASLPLERQ
PRKFWLVADAELIIYGATEPDATVTIGGKEIKLSPDGTFRFQMSFQDGVLDFPIEAVAVD
GEQTRSIRMTFNRETTNRRTNTKEEAQLEWFQ
Download sequence
Identical sequences Q31PL8
gi|81299780|ref|YP_399988.1| 1140.Synpcc7942_0971

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]