SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 10116.ENSRNOP00000048748 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  10116.ENSRNOP00000048748
Domain Number 1 Region: 3-281
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like I 6.73e-65
Family L-arabinose binding protein-like 0.0023
Further Details:      
 
Weak hits

Sequence:  10116.ENSRNOP00000048748
Domain Number - Region: 464-509
Classification Level Classification E-value
Superfamily TNF receptor-like 0.0353
Family TNF receptor-like 0.01
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 10116.ENSRNOP00000048748
Sequence length 787
Comment (Rattus norvegicus)
Sequence
KNHKYALTLAFSIDEINRNPDLLPNMSLIIKYPFGYCDGKTIMPTPYLYHKDFDKPIPNY
FCKEETKCTFLLTGPHWGTSLLFLTNLDIFSSPRLTYGPFHSILNDNEQYPYLYQMARKD
TSLALAMVSFILYFNWNWVGLFISDDDQGNQFLSELKKVSVNKNICFAFVSMMSIYEVSF
YHKTEMYYRQIVMSSTNVIIIYGEADSIIELKFKVWEYPVKQRIWVTTKQWNFPTSKREL
THDTFYGTFTFLQHHGEISGFKNFVQTWYHLRSTDLYQVEFLLLDDVWYLQLHSCLKSLR
CPHLAEYEIFPKICRFLNFFHKEEQNRMTVFASVYHCMYFVSVHLYLYILVSVICVILKK
CEALSVLMCDDYDIFHILNFSQHLGIKNEQYSPIYNRSTSFYKNGEIMSNTLIFVQILPV
FTAIVRILTIFSRFKCLQILTCFSVALIKFYLKYVSHFSQMPFSVCSEDCGPGFRRFWKE
GMAACCFVCRPCPENEISNETNMDQCVNCPEYQFANMKQNKCIQKGYEDPLGMALALVAF
CFSEITAVVLWIFVKHHNTPIVKANNRNLSYLLLMSLMFCFLCTFFFIGHPNRATCLLQQ
ITFGIVFTVAVSTVLAKTITVVLAFKVTDPGRRLRNVLVSKTLNYIIPICSLFQCILCAI
WLAVSPSFVDIDEHTEHGHSIIVCNKGSVTAFYCVLGYLACLALGSFTVAFLAKNLPDIF
NEAKFLTFSMLVFCSVWVTFLPVYHSTKGRVMVVVEIFSIIASSSGMLGCIFAPKIYIIL
MRPDRNS
Download sequence
Identical sequences 10116.ENSRNOP00000048748 ENSRNOP00000048748

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]